Wall clock time and date at job start Mon Mar 30 2020 01:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47061 * 240.00082 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 C 1.50703 * 109.47064 * 179.97438 * 13 11 10 15 15 C 1.38461 * 120.01707 * 269.72278 * 14 13 11 16 16 F 1.35102 * 120.02152 * 0.02562 * 15 14 13 17 17 C 1.38447 * 119.95943 * 179.71836 * 15 14 13 18 18 C 1.38229 * 119.99957 * 0.53819 * 17 15 14 19 19 C 1.38198 * 120.03839 * 359.75867 * 18 17 15 20 20 C 1.38288 * 120.02170 * 89.99745 * 14 13 11 21 21 Cl 1.73606 * 119.99782 * 0.02706 * 20 14 13 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 24 24 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 25 25 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 26 26 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 27 27 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 28 28 H 1.07995 * 119.99810 * 180.27394 * 17 15 14 29 29 H 1.07998 * 119.98104 * 179.74437 * 18 17 15 30 30 H 1.07998 * 119.98167 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 6 1.9797 -7.3339 0.0032 15 6 1.6370 -7.9359 1.2020 16 9 1.9774 -7.3535 2.3726 17 6 0.9397 -9.1320 1.2006 18 6 0.5958 -9.7300 0.0027 19 6 0.9432 -9.1322 -1.1938 20 6 1.6352 -7.9338 -1.1942 21 17 2.0713 -7.1837 -2.6979 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 3.1568 -3.4354 0.0021 26 1 3.3612 -5.9713 -0.8858 27 1 3.3585 -5.9707 0.8942 28 1 0.6682 -9.5998 2.1353 29 1 0.0554 -10.6651 0.0019 30 1 0.6744 -9.6004 -2.1292 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151661.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:00 Heat of formation + Delta-G solvation = -74.766110 kcal Electronic energy + Delta-G solvation = -17849.326310 eV Core-core repulsion = 14584.507147 eV Total energy + Delta-G solvation = -3264.819163 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.94941 -39.64646 -38.35754 -36.49923 -34.20040 -32.93133 -32.26436 -30.52492 -28.39201 -26.54151 -23.04135 -22.88643 -21.74000 -19.68302 -17.85748 -17.15305 -16.90136 -16.11009 -15.82710 -15.33473 -15.06554 -14.80351 -14.53076 -14.21527 -13.61208 -13.41891 -13.18023 -12.66262 -12.55969 -11.94990 -11.93163 -11.49708 -11.46503 -11.35702 -11.00053 -10.88372 -10.82751 -10.30273 -9.39913 -9.26684 -8.81614 -8.74728 -8.71843 -7.87169 -6.14972 -4.22023 0.89265 0.95895 1.99534 3.26462 3.27602 3.31291 3.32956 3.36351 4.11981 4.17452 4.37658 4.49053 4.65622 4.71943 5.05585 5.20969 5.24535 5.42295 5.52924 5.61159 5.82200 5.89982 6.00978 6.04225 6.59980 7.31917 7.44196 7.53706 7.67372 7.98436 8.62594 8.78612 9.09882 9.44398 10.95231 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.004410 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.134836 B = 6346.993580 C = 6828.886103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.711 5.711 11 C 0.505 3.495 12 O -0.547 6.547 13 C -0.114 4.114 14 C -0.081 4.081 15 C 0.124 3.876 16 F -0.129 7.129 17 C -0.150 4.150 18 C -0.084 4.084 19 C -0.122 4.122 20 C 0.003 3.997 21 Cl -0.052 7.052 22 H 0.266 0.734 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.391 0.609 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.749 -19.456 -1.123 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.359 5.359 11 C 0.289 3.711 12 O -0.426 6.426 13 C -0.154 4.154 14 C -0.083 4.083 15 C 0.104 3.896 16 F -0.108 7.108 17 C -0.169 4.169 18 C -0.103 4.103 19 C -0.140 4.140 20 C -0.024 4.024 21 Cl -0.023 7.023 22 H 0.076 0.924 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.223 0.777 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.759 -19.344 -1.214 19.958 hybrid contribution 0.942 1.262 0.097 1.578 sum 5.701 -18.082 -1.117 18.992 Atomic orbital electron populations 1.69964 1.06122 1.27404 1.48819 1.24947 0.94902 0.99425 0.94688 0.86474 0.79418 0.82317 0.78693 1.20064 1.21066 1.20050 1.21191 0.93241 0.90447 1.53330 0.91919 1.19104 0.88276 0.81850 0.97744 1.46413 1.11164 1.05922 1.72402 1.20058 0.89139 0.84052 0.77836 1.90676 1.16585 1.84781 1.50568 1.20753 0.98458 0.90393 1.05804 1.19200 1.01425 0.96743 0.90939 1.17282 0.98854 0.92799 0.80650 1.91523 1.90106 1.83916 1.45220 1.21187 1.00431 0.95089 1.00200 1.20891 0.98675 0.99910 0.90779 1.21051 0.99081 0.94345 0.99566 1.20513 1.00398 0.94717 0.86801 1.98387 1.91341 1.82010 1.30592 0.92396 0.95502 0.95553 0.77664 0.87416 0.87730 0.84174 0.84165 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.78 5.43 -5.19 -0.03 6.75 16 10 N -0.71 -15.34 5.55 -61.47 -0.34 -15.68 16 11 C 0.51 10.41 7.82 -10.98 -0.09 10.32 16 12 O -0.55 -13.52 16.03 5.56 0.09 -13.43 16 13 C -0.11 -1.73 5.26 -29.03 -0.15 -1.89 16 14 C -0.08 -1.21 4.38 -104.52 -0.46 -1.67 16 15 C 0.12 1.76 7.24 -39.42 -0.29 1.47 16 16 F -0.13 -1.96 16.47 2.25 0.04 -1.93 16 17 C -0.15 -1.67 10.03 -39.51 -0.40 -2.06 16 18 C -0.08 -0.80 10.04 -39.60 -0.40 -1.20 16 19 C -0.12 -1.32 9.83 -39.54 -0.39 -1.71 16 20 C 0.00 0.04 6.31 -39.51 -0.25 -0.21 16 21 Cl -0.05 -0.71 27.30 -51.86 -1.42 -2.13 16 22 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.39 7.16 8.32 -40.82 -0.34 6.82 16 26 H 0.11 1.42 6.90 -51.93 -0.36 1.06 16 27 H 0.10 1.38 7.63 -51.93 -0.40 0.98 16 28 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -33.06 289.80 -7.15 -40.21 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -2.74 Total: 1.98 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.86 Total: -3.74 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.40 Total: -41.33 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.42 Total: -2.13 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.06 -7.15 -40.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151661.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.561 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds