Wall clock time and date at job start Mon Mar 30 2020 01:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47061 * 240.00082 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 C 1.50703 * 109.47064 * 179.97438 * 13 11 10 15 15 C 1.38461 * 120.01707 * 269.72278 * 14 13 11 16 16 F 1.35102 * 120.02152 * 0.02562 * 15 14 13 17 17 C 1.38447 * 119.95943 * 179.71836 * 15 14 13 18 18 C 1.38229 * 119.99957 * 0.53819 * 17 15 14 19 19 C 1.38198 * 120.03839 * 359.75867 * 18 17 15 20 20 C 1.38288 * 120.02170 * 89.99745 * 14 13 11 21 21 Cl 1.73606 * 119.99782 * 0.02706 * 20 14 13 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 24 24 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 25 25 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 26 26 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 27 27 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 28 28 H 1.07995 * 119.99810 * 180.27394 * 17 15 14 29 29 H 1.07998 * 119.98104 * 179.74437 * 18 17 15 30 30 H 1.07998 * 119.98167 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 6 1.9797 -7.3339 0.0032 15 6 1.6370 -7.9359 1.2020 16 9 1.9774 -7.3535 2.3726 17 6 0.9397 -9.1320 1.2006 18 6 0.5958 -9.7300 0.0027 19 6 0.9432 -9.1322 -1.1938 20 6 1.6352 -7.9338 -1.1942 21 17 2.0713 -7.1837 -2.6979 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 3.1568 -3.4354 0.0021 26 1 3.3612 -5.9713 -0.8858 27 1 3.3585 -5.9707 0.8942 28 1 0.6682 -9.5998 2.1353 29 1 0.0554 -10.6651 0.0019 30 1 0.6744 -9.6004 -2.1292 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151661.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:00 Heat of formation + Delta-G solvation = -96.786246 kcal Electronic energy + Delta-G solvation = -17850.281174 eV Core-core repulsion = 14584.507147 eV Total energy + Delta-G solvation = -3265.774027 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.02607 -40.93964 -39.73935 -37.49834 -36.17993 -34.42692 -33.96668 -31.43172 -30.00890 -28.18721 -24.82518 -23.88935 -23.02573 -21.40220 -19.10815 -18.72503 -17.93227 -17.62634 -17.30917 -16.67064 -16.61349 -16.19342 -15.94210 -15.72551 -14.75381 -14.65432 -14.41318 -14.15587 -14.10664 -13.89877 -13.29154 -12.96848 -12.71791 -12.61729 -12.45078 -12.37212 -12.24668 -11.90165 -11.52486 -10.93641 -10.80469 -9.86754 -9.85836 -9.72480 -8.29873 -6.46927 -0.03524 0.01470 1.00366 1.42393 1.46722 1.54894 1.70360 2.24557 2.38599 2.69795 3.04828 3.21465 3.38467 3.70100 3.88827 4.02107 4.21803 4.34211 4.39445 4.53123 4.85810 5.03624 5.08573 5.10351 5.20152 5.22082 5.46095 5.66113 5.72166 5.83013 6.63190 6.85121 7.21797 7.43765 8.82229 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.004410 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.134836 B = 6346.993580 C = 6828.886103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.268 3.732 10 N -0.707 5.707 11 C 0.503 3.497 12 O -0.591 6.591 13 C -0.100 4.100 14 C -0.111 4.111 15 C 0.096 3.904 16 F -0.143 7.143 17 C -0.148 4.148 18 C -0.069 4.069 19 C -0.120 4.120 20 C -0.015 4.015 21 Cl -0.062 7.062 22 H 0.269 0.731 23 H -0.012 1.012 24 H -0.014 1.014 25 H 0.409 0.591 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.167 0.833 29 H 0.185 0.815 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -20.677 -1.222 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.357 5.357 11 C 0.290 3.710 12 O -0.473 6.473 13 C -0.139 4.139 14 C -0.113 4.113 15 C 0.076 3.924 16 F -0.122 7.122 17 C -0.166 4.166 18 C -0.087 4.087 19 C -0.138 4.138 20 C -0.042 4.042 21 Cl -0.032 7.032 22 H 0.078 0.922 23 H 0.006 0.994 24 H 0.004 0.996 25 H 0.244 0.756 26 H 0.146 0.854 27 H 0.143 0.857 28 H 0.184 0.816 29 H 0.202 0.798 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.155 -20.598 -1.314 21.538 hybrid contribution 0.441 1.499 0.125 1.567 sum 6.596 -19.099 -1.188 20.241 Atomic orbital electron populations 1.70133 1.08311 1.28659 1.49861 1.26071 0.95765 1.03909 0.93751 0.85201 0.77919 0.76536 0.79522 1.18621 1.21011 1.18636 1.21590 0.94325 0.90540 1.53118 0.89783 1.18532 0.88634 0.84248 0.94008 1.46173 1.11283 1.05408 1.72834 1.21005 0.89554 0.84658 0.75794 1.90641 1.19036 1.85449 1.52142 1.20657 0.97258 0.88316 1.07689 1.19276 1.03149 0.96899 0.91971 1.17678 1.00378 0.94257 0.80057 1.91480 1.90457 1.84390 1.45831 1.21604 0.98968 0.93859 1.02184 1.21434 0.97069 1.00759 0.89397 1.21487 0.97644 0.93248 1.01456 1.20768 1.01469 0.95876 0.86093 1.98378 1.91518 1.82391 1.30962 0.92220 0.99447 0.99616 0.75561 0.85402 0.85710 0.81591 0.79761 0.81725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 2 C 0.00 0.26 5.46 84.66 0.46 0.73 16 3 Si 0.99 42.81 29.54 68.60 2.03 44.83 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.56 -30.95 9.28 25.60 0.24 -30.72 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.17 16 9 C 0.27 15.18 5.43 85.63 0.46 15.65 16 10 N -0.71 -31.23 5.55 -466.78 -2.59 -33.82 16 11 C 0.50 21.23 7.82 87.66 0.69 21.91 16 12 O -0.59 -30.41 16.03 -3.03 -0.05 -30.45 16 13 C -0.10 -3.00 5.26 29.10 0.15 -2.85 16 14 C -0.11 -3.25 4.38 -19.80 -0.09 -3.33 16 15 C 0.10 2.64 7.24 22.37 0.16 2.81 16 16 F -0.14 -4.33 16.47 44.97 0.74 -3.59 16 17 C -0.15 -2.91 10.03 22.32 0.22 -2.69 16 18 C -0.07 -1.06 10.04 22.26 0.22 -0.84 16 19 C -0.12 -2.29 9.83 22.29 0.22 -2.07 16 20 C -0.02 -0.40 6.31 22.32 0.14 -0.26 16 21 Cl -0.06 -1.63 27.30 -2.72 -0.07 -1.70 16 22 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 23 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 24 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 25 H 0.41 14.88 8.32 -92.71 -0.77 14.11 16 26 H 0.13 3.27 6.90 -2.39 -0.02 3.25 16 27 H 0.12 3.20 7.63 -2.39 -0.02 3.18 16 28 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -75.14 289.80 3.64 -71.50 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.41 Total: 11.63 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 2.89 Total: -1.65 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -2.30 Total: -90.56 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.05 Total: -30.45 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.74 Total: -3.59 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.70 kcal Total: -75.14 3.64 -71.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151661.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.289 kcal (2) G-P(sol) polarization free energy of solvation -75.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds