Wall clock time and date at job start Mon Mar 30 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.20514 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.47321 * 89.99458 * 6 5 4 8 8 C 1.34772 * 120.00085 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00251 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99941 * 180.02562 * 8 7 6 11 11 S 1.81003 * 109.47174 * 179.97438 * 10 8 7 12 12 C 1.76201 * 100.00041 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00014 * 0.02562 * 12 11 10 14 14 C 1.38799 * 119.99691 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99492 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 120.00277 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47579 * 89.99678 * 16 14 12 18 18 H 1.48507 * 109.47228 * 209.99605 * 16 14 12 19 19 H 1.48502 * 109.47294 * 329.99490 * 16 14 12 20 20 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 21 21 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 24 24 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 25 25 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 26 26 H 1.08999 * 109.47231 * 209.99979 * 6 5 4 27 27 H 1.09000 * 109.47136 * 329.99696 * 6 5 4 28 28 H 0.97001 * 119.99360 * 0.02562 * 7 6 5 29 29 H 1.08999 * 109.47350 * 300.00097 * 10 8 7 30 30 H 1.09003 * 109.47029 * 60.00354 * 10 8 7 31 31 H 0.97002 * 119.99601 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3860 -0.9770 0.0016 7 7 5.8421 -1.1489 1.3832 8 6 7.0827 -1.6139 1.6303 9 8 7.8214 -1.8906 0.7091 10 6 7.5516 -1.7912 3.0515 11 16 9.2464 -2.4269 3.0528 12 6 9.5314 -2.5347 4.7883 13 1 8.7560 -2.2447 5.4819 14 6 10.7520 -2.9934 5.2638 15 7 10.9647 -3.0744 6.5603 16 14 12.0928 -3.4957 4.0642 17 1 12.9402 -2.3181 3.7473 18 1 12.9309 -4.5586 4.6751 19 1 11.4733 -4.0099 2.8163 20 16 2.5210 -1.4371 0.0077 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 1.8669 2.0895 -0.0007 25 1 4.3721 1.6351 0.0002 26 1 5.4141 -1.9378 -0.5125 27 1 6.0393 -0.2713 -0.5115 28 1 5.2512 -0.9279 2.1199 29 1 7.5231 -0.8308 3.5661 30 1 6.8987 -2.4976 3.5641 31 1 11.8179 -3.3946 6.8927 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048790570.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:33 Heat of formation + Delta-G solvation = -14.366861 kcal Electronic energy + Delta-G solvation = -15118.140000 eV Core-core repulsion = 12424.196828 eV Total energy + Delta-G solvation = -2693.943172 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.39909 -38.24132 -34.91975 -32.43941 -32.29903 -30.02175 -27.86864 -25.61870 -24.53663 -22.94761 -20.52777 -19.24977 -17.98144 -17.21668 -16.40319 -16.05823 -15.27483 -15.17050 -14.93855 -14.30124 -13.83082 -13.70597 -13.54804 -13.29374 -12.87515 -12.76850 -12.44982 -12.29725 -11.96210 -11.69124 -11.26396 -11.00646 -10.98625 -10.61475 -9.86954 -9.65172 -9.05563 -8.98546 -8.80992 -8.74510 -8.49965 -6.91653 -6.28599 -4.00372 0.59587 1.27891 1.69329 2.36138 2.81640 2.95118 3.32999 3.39170 3.51106 3.71584 4.33575 4.39131 4.51861 4.74561 4.87830 5.01554 5.10483 5.11601 5.24190 5.28266 5.41101 5.52847 5.61512 5.76573 5.86875 5.94707 6.01809 6.20735 6.44095 7.57890 7.94582 8.42160 8.45286 9.17563 10.80683 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.049907 B = 0.003197 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.906800 B = 8755.523978 C = 8969.708232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.177 4.177 3 C -0.145 4.145 4 C -0.112 4.112 5 C -0.202 4.202 6 C 0.195 3.805 7 N -0.734 5.734 8 C 0.532 3.468 9 O -0.519 6.519 10 C -0.123 4.123 11 S -0.141 6.141 12 C -0.521 4.521 13 H 0.088 0.912 14 C 0.095 3.905 15 N -0.881 5.881 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 S 0.115 5.885 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.140 0.860 25 H 0.142 0.858 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.401 0.599 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.072 7.322 -13.161 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.295 4.295 3 C -0.175 4.175 4 C -0.143 4.143 5 C -0.320 4.320 6 C 0.070 3.930 7 N -0.389 5.389 8 C 0.318 3.682 9 O -0.393 6.393 10 C -0.274 4.274 11 S 0.085 5.915 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 S 0.380 5.620 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.088 0.912 24 H 0.157 0.843 25 H 0.160 0.840 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.236 0.764 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.988 5.238 -14.550 25.271 hybrid contribution -0.190 1.777 1.221 2.164 sum -20.177 7.014 -13.329 25.179 Atomic orbital electron populations 1.20359 0.87773 1.03288 1.02818 1.24613 1.00119 0.96031 1.08718 1.20086 0.92813 0.99346 1.05235 1.20190 0.96368 0.95930 1.01845 1.24468 0.98409 0.96736 1.12339 1.19575 0.87620 1.01295 0.84551 1.46080 1.15957 1.69068 1.07772 1.20311 0.80666 0.75933 0.91316 1.90705 1.53951 1.48631 1.46060 1.23279 1.03402 1.05547 0.95185 1.84783 1.10096 1.84799 1.11831 1.22318 1.04507 1.51131 0.88917 0.89374 1.24719 0.97725 0.93818 0.95086 1.69943 1.24863 1.44840 1.12083 0.86728 0.82576 0.79656 0.82852 1.19204 1.19944 1.15896 1.84424 0.96045 1.08891 1.72670 0.90650 0.90443 0.91206 0.84278 0.84007 0.90521 0.89624 0.76436 0.88410 0.88379 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.38 36.01 0.37 -0.09 16 2 C -0.18 -1.44 6.51 -36.00 -0.23 -1.67 16 3 C -0.14 -1.18 10.05 -41.21 -0.41 -1.60 16 4 C -0.11 -1.01 10.05 -41.21 -0.41 -1.42 16 5 C -0.20 -2.01 5.88 -36.01 -0.21 -2.23 16 6 C 0.19 2.29 6.16 -5.19 -0.03 2.26 16 7 N -0.73 -9.66 5.55 -61.47 -0.34 -10.00 16 8 C 0.53 9.49 7.85 -10.99 -0.09 9.40 16 9 O -0.52 -11.19 15.86 5.56 0.09 -11.10 16 10 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 11 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 12 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 13 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 14 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 15 N -0.88 -26.69 13.97 55.49 0.78 -25.91 16 16 Si 0.86 21.86 27.74 -169.99 -4.71 17.15 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 20 S 0.12 1.06 23.31 -107.50 -2.51 -1.44 16 21 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 25 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.40 4.40 8.46 -40.82 -0.35 4.05 16 29 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 30 H 0.10 1.78 8.14 -51.91 -0.42 1.35 16 31 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 302.42 15.07 4.56 4.56 Total: -1.00 -33.44 302.42 -8.45 -41.88 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -3.73 Total: 0.06 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.58 Total: -9.60 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.43 Total: -35.91 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -4.50 Total: -7.04 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.44 -8.45 -41.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048790570.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.515 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds