Wall clock time and date at job start Mon Mar 30 2020 01:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21561 * 120.00482 * 359.97438 * 13 12 2 15 15 C 1.47696 * 119.99452 * 179.97438 * 13 12 2 16 16 C 1.39648 * 120.16535 * 359.72163 * 15 13 12 17 17 C 1.37965 * 119.86835 * 179.79207 * 16 15 13 18 18 Cl 1.73599 * 119.90853 * 180.23080 * 17 16 15 19 19 C 1.38572 * 120.18911 * 0.46211 * 17 16 15 20 20 C 1.38187 * 120.32337 * 359.79033 * 19 17 16 21 21 C 1.38315 * 120.13369 * 359.97423 * 20 19 17 22 22 F 1.35101 * 120.09781 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 27 27 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 28 28 H 1.08006 * 120.06786 * 0.02562 * 16 15 13 29 29 H 1.08002 * 119.83643 * 179.76439 * 19 17 16 30 30 H 1.08004 * 119.92827 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8583 1.1613 2.4117 15 6 2.6389 -0.7147 3.5632 16 6 2.9660 -2.0711 3.5059 17 6 3.4290 -2.7145 4.6351 18 17 3.8416 -4.3992 4.5635 19 6 3.5609 -2.0210 5.8275 20 6 3.2345 -0.6799 5.8944 21 6 2.7738 -0.0204 4.7693 22 9 2.4544 1.2906 4.8357 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 2.2491 -1.6318 1.1527 28 1 2.8604 -2.6145 2.5784 29 1 3.9203 -2.5313 6.7089 30 1 3.3395 -0.1457 6.8272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336068.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:25 Heat of formation + Delta-G solvation = -86.847759 kcal Electronic energy + Delta-G solvation = -18009.763736 eV Core-core repulsion = 14744.420674 eV Total energy + Delta-G solvation = -3265.343062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.00488 -41.12581 -39.53551 -37.43922 -36.79190 -34.50654 -32.84012 -31.36496 -30.54216 -27.37249 -25.54449 -23.98391 -22.82565 -21.39891 -19.79449 -18.48987 -18.01348 -17.68397 -16.98294 -16.86842 -16.67032 -15.97728 -15.74646 -15.47822 -14.72881 -14.50830 -14.42580 -14.27775 -13.75712 -13.62016 -13.03172 -12.91117 -12.76206 -12.68460 -12.32138 -12.27570 -12.17523 -12.05403 -11.16202 -10.95414 -10.61408 -10.41418 -9.89353 -9.68584 -8.18909 -6.37247 -0.50930 -0.13851 0.97937 1.45424 1.47753 1.55584 1.70254 2.23830 2.47235 2.49544 3.03340 3.11697 3.46726 3.56337 3.92118 4.03665 4.34604 4.54820 4.70666 4.80328 4.86927 4.87839 4.96164 5.04483 5.37102 5.47654 5.53229 5.62917 5.84023 6.04921 6.67822 6.79316 7.25097 7.40485 8.87510 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.020479 B = 0.005173 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.958731 B = 5411.730991 C = 6538.698234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H 0.000 1.000 4 C -0.549 4.549 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.262 1.262 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.693 5.693 13 C 0.537 3.463 14 O -0.586 6.586 15 C -0.173 4.173 16 C -0.049 4.049 17 C -0.055 4.055 18 Cl -0.045 7.045 19 C -0.040 4.040 20 C -0.135 4.135 21 C 0.134 3.866 22 F -0.133 7.133 23 H 0.069 0.931 24 H 0.010 0.990 25 H 0.043 0.957 26 H 0.266 0.734 27 H 0.405 0.595 28 H 0.155 0.845 29 H 0.189 0.811 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 -11.362 17.213 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.018 0.982 4 C -0.587 4.587 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.187 1.187 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.342 5.342 13 C 0.325 3.675 14 O -0.468 6.468 15 C -0.177 4.177 16 C -0.068 4.068 17 C -0.082 4.082 18 Cl -0.016 7.016 19 C -0.059 4.059 20 C -0.154 4.154 21 C 0.114 3.886 22 F -0.111 7.111 23 H 0.088 0.912 24 H 0.029 0.971 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.241 0.759 28 H 0.172 0.828 29 H 0.206 0.794 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.062 -10.519 17.053 20.933 hybrid contribution 0.010 -0.057 -1.228 1.229 sum 6.072 -10.576 15.825 19.979 Atomic orbital electron populations 1.21905 0.98021 0.99676 0.99659 1.18438 0.91339 0.92029 0.81528 0.98191 1.21479 1.32932 1.13753 0.90570 0.90622 1.25818 0.94762 0.95543 1.02363 1.70050 1.36821 1.23851 1.24787 0.85355 0.78624 0.78737 0.77375 1.18677 1.21171 1.19578 1.46204 1.64467 1.14179 1.09389 1.18567 0.78381 0.86447 0.84146 1.90769 1.52897 1.17417 1.85688 1.20028 1.08727 0.95524 0.93466 1.21195 0.94755 0.91289 0.99577 1.20876 1.04571 0.87420 0.95354 1.98401 1.91889 1.12702 1.98646 1.21511 0.94447 0.92443 0.97469 1.21431 1.00797 0.95212 0.97913 1.18267 0.97671 0.78395 0.94305 1.91558 1.89746 1.33024 1.96800 0.91187 0.97075 0.93794 0.92453 0.75879 0.82792 0.79423 0.79783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 2 C 0.27 14.29 2.56 44.24 0.11 14.40 16 3 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 4 C -0.55 -29.13 8.73 25.60 0.22 -28.90 16 5 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -52.80 11.32 21.45 0.24 -52.56 16 8 Si 0.97 41.77 29.54 68.60 2.03 43.79 16 9 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 10 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 N -0.69 -29.86 5.02 -449.13 -2.25 -32.11 16 13 C 0.54 23.23 7.73 86.74 0.67 23.90 16 14 O -0.59 -30.87 15.00 -3.91 -0.06 -30.93 16 15 C -0.17 -5.52 5.88 -20.06 -0.12 -5.64 16 16 C -0.05 -1.17 9.31 22.55 0.21 -0.96 16 17 C -0.06 -1.01 6.31 22.28 0.14 -0.86 16 18 Cl -0.05 -0.73 28.95 -2.72 -0.08 -0.81 16 19 C -0.04 -0.55 9.82 22.34 0.22 -0.33 16 20 C -0.13 -2.34 10.01 22.28 0.22 -2.11 16 21 C 0.13 3.86 7.28 22.67 0.17 4.03 16 22 F -0.13 -4.73 15.55 44.97 0.70 -4.03 16 23 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.40 14.38 6.57 -92.71 -0.61 13.77 16 28 H 0.15 3.38 6.41 -2.91 -0.02 3.36 16 29 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 30 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -70.25 283.97 4.12 -66.13 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.58 Total: 11.97 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 2.96 Total: -1.45 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -2.01 Total: -84.67 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.06 Total: -30.93 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.70 Total: -4.03 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -70.25 4.12 -66.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336068.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.715 kcal (2) G-P(sol) polarization free energy of solvation -70.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds