Wall clock time and date at job start Mon Mar 30 2020 01:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35904 * 116.99628 * 180.02562 * 11 10 9 13 13 C 1.38730 * 120.05131 * 359.73070 * 12 11 10 14 14 C 1.38239 * 119.93060 * 179.74393 * 13 12 11 15 15 Cl 1.73602 * 119.98220 * 180.24972 * 14 13 12 16 16 C 1.38402 * 120.03047 * 0.50530 * 14 13 12 17 17 C 1.38226 * 120.09715 * 359.76487 * 16 14 13 18 18 C 1.38174 * 120.06771 * 359.97438 * 17 16 14 19 19 N 1.48002 * 120.01430 * 179.97438 * 18 17 16 20 20 O 1.21807 * 120.00303 * 0.02562 * 19 18 17 21 21 O 1.21799 * 120.00568 * 180.02562 * 19 18 17 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.08006 * 120.03247 * 359.97097 * 13 12 11 28 28 H 1.07999 * 119.95095 * 179.74773 * 16 14 13 29 29 H 1.07999 * 119.96632 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 8 1.5308 -4.8996 0.0020 12 6 2.2711 -6.0394 0.0024 13 6 3.6565 -5.9679 -0.0034 14 6 4.4070 -7.1288 0.0024 15 17 6.1408 -7.0410 0.0018 16 6 3.7769 -8.3610 0.0033 17 6 2.3965 -8.4337 0.0034 18 6 1.6424 -7.2759 0.0031 19 7 0.1645 -7.3550 0.0025 20 8 -0.3874 -8.4409 0.0029 21 8 -0.5002 -6.3343 0.0018 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5564 0.8919 25 1 2.8714 -3.6047 -0.8890 26 1 2.8726 -3.6039 0.8910 27 1 4.1482 -5.0063 -0.0086 28 1 4.3645 -9.2672 0.0037 29 1 1.9070 -9.3963 0.0037 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051609279.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:54 Heat of formation + Delta-G solvation = -48.131995 kcal Electronic energy + Delta-G solvation = -17889.062093 eV Core-core repulsion = 14613.025083 eV Total energy + Delta-G solvation = -3276.037010 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.25120 -41.45075 -39.21725 -37.73047 -37.51371 -35.52048 -33.12911 -32.51418 -31.28602 -27.55328 -27.16737 -24.54333 -23.58718 -22.61726 -20.64735 -19.73752 -19.31259 -18.62024 -18.29677 -17.43855 -17.24246 -16.74049 -16.51682 -15.81648 -14.97788 -14.96391 -14.36778 -14.01474 -13.93225 -13.43950 -12.95542 -12.87344 -12.66751 -12.62900 -12.51582 -12.25269 -12.21638 -12.14732 -11.77097 -11.68992 -11.42162 -10.64712 -10.55815 -9.83697 -8.26956 -6.41757 -1.33433 -0.20343 0.12472 0.34181 0.69222 1.40962 1.42107 1.55019 1.81000 1.99182 2.39915 3.07877 3.12954 3.39158 3.62234 3.64042 3.99223 4.14056 4.21790 4.34331 4.52041 4.64500 4.74454 5.00817 5.20105 5.33849 5.42211 5.65324 5.96162 6.06049 6.52776 6.74011 7.28965 8.86258 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.005103 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.047908 B = 5485.236801 C = 7113.837432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.029 3.971 10 C 0.071 3.929 11 O -0.303 6.303 12 C 0.196 3.804 13 C -0.213 4.213 14 C 0.059 3.941 15 Cl -0.022 7.022 16 C -0.136 4.136 17 C 0.006 3.994 18 C -0.109 4.109 19 N 0.038 4.962 20 O -0.146 6.146 21 O -0.218 6.218 22 H 0.266 0.734 23 H -0.003 1.003 24 H -0.002 1.002 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.168 0.832 28 H 0.200 0.800 29 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.917 -18.473 0.002 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.095 0.905 9 C -0.008 4.008 10 C -0.002 4.002 11 O -0.213 6.213 12 C 0.145 3.855 13 C -0.233 4.233 14 C 0.032 3.968 15 Cl 0.007 6.993 16 C -0.155 4.155 17 C -0.013 4.013 18 C -0.194 4.194 19 N 0.550 4.450 20 O -0.368 6.368 21 O -0.419 6.419 22 H 0.075 0.925 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.185 0.815 28 H 0.217 0.783 29 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 14.382 -18.137 0.002 23.147 hybrid contribution -0.466 1.295 0.002 1.376 sum 13.915 -16.843 0.004 21.848 Atomic orbital electron populations 1.70146 1.08181 1.28187 1.50474 1.26064 0.95757 1.03796 0.94195 0.85232 0.79188 0.77872 0.77726 1.17726 1.20457 1.20470 1.21411 0.93966 0.90622 1.52193 0.90497 1.18951 0.94492 0.91184 0.96220 1.23293 0.95836 0.79077 1.02028 1.86504 1.36458 1.13591 1.84770 1.18959 0.90858 0.85989 0.89663 1.21335 0.90168 1.01570 1.10235 1.21199 0.86824 0.94230 0.94586 1.98440 1.06387 1.98690 1.95765 1.21367 0.92466 0.98074 1.03559 1.21251 0.93416 0.96923 0.89706 1.20976 0.78732 0.95308 1.24397 1.43674 1.04163 1.00122 0.97083 1.94403 1.74122 1.16213 1.52082 1.94738 1.65062 1.25300 1.56792 0.92474 0.98407 0.98403 0.90382 0.90380 0.81505 0.78327 0.78730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.45 15 2 C 0.00 0.03 5.46 84.66 0.46 0.50 15 3 Si 0.98 42.76 29.54 68.60 2.03 44.79 15 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 15 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 15 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 7 C -0.54 -29.75 9.11 25.60 0.23 -29.51 15 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 15 9 C 0.03 1.54 5.34 29.85 0.16 1.70 15 10 C 0.07 2.86 4.68 71.98 0.34 3.20 15 11 O -0.30 -12.30 8.15 -71.31 -0.58 -12.88 15 12 C 0.20 6.13 6.67 22.50 0.15 6.28 15 13 C -0.21 -5.04 8.82 22.39 0.20 -4.84 15 14 C 0.06 1.01 6.32 22.31 0.14 1.15 15 15 Cl -0.02 -0.32 28.95 -2.72 -0.08 -0.40 15 16 C -0.14 -1.73 9.83 22.31 0.22 -1.51 15 17 C 0.01 0.10 9.55 22.25 0.21 0.31 15 18 C -0.11 -3.11 6.87 36.48 0.25 -2.86 15 19 N 0.04 1.35 4.45 -46.24 -0.21 1.14 15 20 O -0.15 -4.71 18.45 18.88 0.35 -4.36 15 21 O -0.22 -9.64 17.24 25.61 0.44 -9.20 15 22 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 23 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 15 24 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 15 25 H 0.08 2.80 7.65 -2.39 -0.02 2.78 15 26 H 0.08 2.80 7.67 -2.39 -0.02 2.78 15 27 H 0.17 3.76 6.30 -2.91 -0.02 3.74 15 28 H 0.20 0.88 8.06 -2.91 -0.02 0.85 15 29 H 0.20 2.20 7.61 -2.91 -0.02 2.17 15 Total: -1.00 -70.69 283.65 5.79 -64.91 By element: Atomic # 1 Polarization: -3.15 SS G_CDS: 1.19 Total: -1.96 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 2.36 Total: -25.59 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.08 Total: -55.31 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: 0.21 Total: -26.44 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -70.69 5.79 -64.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051609279.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.776 kcal (2) G-P(sol) polarization free energy of solvation -70.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds