Wall clock time and date at job start Mon Mar 30 2020 00:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 N 1.46496 * 109.47238 * 179.97438 * 10 9 7 12 12 C 1.35820 * 119.62894 * 89.99954 * 11 10 9 13 13 Br 1.89103 * 119.66847 * 0.02562 * 12 11 10 14 14 C 1.35570 * 120.66867 * 180.02562 * 12 11 10 15 15 C 1.40072 * 119.92436 * 359.97438 * 14 12 11 16 16 C 1.36475 * 119.27729 * 0.02562 * 15 14 12 17 17 C 1.34659 * 119.63278 * 269.73361 * 11 10 9 18 18 O 1.22067 * 119.97739 * 359.97438 * 17 11 10 19 19 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 21 21 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 22 22 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 23 23 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 24 24 H 1.08001 * 120.03917 * 179.97438 * 14 12 11 25 25 H 1.07994 * 120.35924 * 180.02562 * 15 14 12 26 26 H 1.07997 * 120.32818 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 7 1.5126 -4.9308 -0.0075 12 6 1.1711 -5.5096 -1.1878 13 35 1.6466 -4.6700 -2.8141 14 6 0.4928 -6.6831 -1.2118 15 6 0.1384 -7.3101 -0.0104 16 6 0.4829 -6.7262 1.1740 17 6 1.1902 -5.5129 1.1632 18 8 1.5087 -4.9832 2.2158 19 1 -0.4851 0.8401 0.0004 20 1 0.6283 -2.5592 0.8921 21 1 0.6202 -2.5546 -0.8878 22 1 2.8677 -3.6020 -0.9008 23 1 2.8758 -3.6067 0.8792 24 1 0.2261 -7.1342 -2.1562 25 1 -0.4016 -8.2452 -0.0214 26 1 0.2178 -7.1946 2.1104 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057839566.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:38 Heat of formation + Delta-G solvation = -2.995825 kcal Electronic energy + Delta-G solvation = -13289.111235 eV Core-core repulsion = 10800.603790 eV Total energy + Delta-G solvation = -2488.507445 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 270.995 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.01935 -36.68317 -35.06416 -32.94645 -31.73350 -29.89343 -28.79508 -25.50279 -23.29473 -22.78867 -20.95594 -17.32654 -17.17497 -16.32829 -15.83185 -15.35836 -14.49712 -14.25503 -13.91578 -13.18257 -12.62624 -12.35441 -12.22992 -11.92609 -11.56017 -10.99903 -10.86067 -10.56081 -10.39435 -10.19141 -9.93126 -9.64533 -9.31840 -9.24628 -8.41434 -7.71809 -6.06276 -4.10448 0.81011 1.19309 1.93570 3.01997 3.31475 3.35888 3.38648 3.84520 4.42037 4.79660 4.96652 5.21349 5.30296 5.34593 5.77735 5.96126 6.15369 6.20263 6.27249 6.49569 6.57933 7.23776 7.52823 7.64866 7.89234 8.23782 8.35458 8.93565 9.53525 11.05228 Molecular weight = 270.99amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.007909 C = 0.006309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.121412 B = 3539.384500 C = 4437.031985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.018 3.982 10 C 0.076 3.924 11 N -0.473 5.473 12 C 0.165 3.835 13 Br 0.008 6.992 14 C -0.212 4.212 15 C -0.021 4.021 16 C -0.234 4.234 17 C 0.512 3.488 18 O -0.539 6.539 19 H 0.263 0.737 20 H 0.025 0.975 21 H 0.026 0.974 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.149 0.851 25 H 0.139 0.861 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.208 -14.771 -7.358 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.019 4.019 10 C -0.044 4.044 11 N -0.183 5.183 12 C -0.026 4.026 13 Br 0.093 6.907 14 C -0.239 4.239 15 C -0.044 4.044 16 C -0.257 4.257 17 C 0.313 3.687 18 O -0.420 6.420 19 H 0.073 0.927 20 H 0.043 0.957 21 H 0.044 0.956 22 H 0.105 0.895 23 H 0.113 0.887 24 H 0.167 0.833 25 H 0.157 0.843 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.482 -13.914 -7.252 15.760 hybrid contribution 0.202 0.734 0.271 0.808 sum 1.685 -13.180 -6.981 15.010 Atomic orbital electron populations 1.69960 1.06118 1.26977 1.49871 1.24967 0.94852 0.99290 0.94912 0.86582 0.79543 0.82740 0.78729 1.20104 1.21201 1.20067 1.20909 0.92994 0.90158 1.51982 0.92328 1.19374 0.93922 0.90261 0.98389 1.22813 0.96998 0.80534 1.04035 1.46060 1.45413 1.22098 1.04720 1.22700 0.98784 0.94633 0.86484 1.96879 1.91502 1.80985 1.21321 1.20539 1.06979 0.95989 1.00369 1.21286 0.93553 0.98165 0.91372 1.22245 1.06095 0.97329 1.00024 1.17116 0.82290 0.86558 0.82752 1.90984 1.56291 1.65827 1.28942 0.92746 0.95689 0.95580 0.89451 0.88702 0.83301 0.84315 0.83326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.09 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 15 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 9 C 0.02 0.48 5.30 -27.88 -0.15 0.33 15 10 C 0.08 1.63 4.80 -4.04 -0.02 1.61 15 11 N -0.47 -9.09 2.59 -117.82 -0.30 -9.39 15 12 C 0.16 2.61 6.98 -16.74 -0.12 2.49 15 13 Br 0.01 0.12 31.49 -68.01 -2.14 -2.02 15 14 C -0.21 -2.65 9.71 -39.85 -0.39 -3.03 15 15 C -0.02 -0.25 10.09 -39.53 -0.40 -0.65 15 16 C -0.23 -3.50 9.99 -39.39 -0.39 -3.90 15 17 C 0.51 10.17 7.40 -15.48 -0.11 10.06 15 18 O -0.54 -12.87 16.63 4.86 0.08 -12.79 15 19 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 20 H 0.02 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.03 0.70 8.09 -51.93 -0.42 0.28 15 22 H 0.09 1.71 6.42 -51.93 -0.33 1.38 15 23 H 0.09 2.14 7.38 -51.93 -0.38 1.76 15 24 H 0.15 1.39 8.06 -52.49 -0.42 0.97 15 25 H 0.14 1.05 8.06 -52.49 -0.42 0.63 15 26 H 0.15 1.92 8.06 -52.49 -0.42 1.50 15 LS Contribution 253.95 15.07 3.83 3.83 Total: -1.00 -32.60 253.95 -7.18 -39.78 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -2.37 Total: -3.52 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.99 Total: -6.39 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.43 Total: -35.48 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -2.14 Total: -2.02 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.60 -7.18 -39.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057839566.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.787 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds