Wall clock time and date at job start Mon Mar 30 2020 00:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 119.99816 * 2 1 4 4 H 1.48504 * 109.46684 * 269.99669 * 3 2 1 5 5 H 1.48497 * 109.47302 * 29.99356 * 3 2 1 6 6 H 1.48502 * 109.47005 * 149.99992 * 3 2 1 7 7 C 1.38810 * 119.99623 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00480 * 359.97438 * 7 2 1 9 9 O 1.34857 * 119.99452 * 180.02562 * 7 2 1 10 10 C 1.34739 * 116.99938 * 179.97438 * 9 7 2 11 11 O 1.21506 * 119.99453 * 0.02562 * 10 9 7 12 12 C 1.47657 * 119.99868 * 179.97438 * 10 9 7 13 13 C 1.39651 * 120.56638 * 0.02562 * 12 10 9 14 14 N 1.31652 * 120.57425 * 179.97438 * 13 12 10 15 15 C 1.31948 * 121.89933 * 359.97438 * 14 13 12 16 16 C 1.38412 * 121.08988 * 359.97438 * 15 14 13 17 17 Br 1.89101 * 120.35553 * 180.02562 * 16 15 14 18 18 C 1.38460 * 119.29486 * 0.02562 * 16 15 14 19 19 H 0.97002 * 120.00085 * 0.02562 * 1 2 3 20 20 H 1.07995 * 119.71372 * 359.97438 * 13 12 10 21 21 H 1.08003 * 119.45676 * 180.02562 * 15 14 13 22 22 H 1.08003 * 120.86613 * 180.25238 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0081 -1.2022 0.0005 8 1 1.4682 -2.1375 0.0014 9 8 3.3567 -1.2021 0.0011 10 6 3.9684 -2.4027 0.0021 11 8 3.3066 -3.4216 0.0021 12 6 5.4430 -2.4799 0.0022 13 6 6.2151 -1.3162 0.0017 14 7 7.5298 -1.3849 0.0022 15 6 8.1677 -2.5399 0.0037 16 6 7.4756 -3.7386 0.0054 17 35 8.4109 -5.3821 0.0083 18 6 6.0911 -3.7215 0.0048 19 1 -0.4850 0.8401 -0.0004 20 1 5.7294 -0.3516 0.0008 21 1 9.2477 -2.5502 0.0046 22 1 5.5256 -4.6417 0.0102 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060570573.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:59 Heat of formation + Delta-G solvation = -58.127703 kcal Electronic energy + Delta-G solvation = -12720.652060 eV Core-core repulsion = 10093.920824 eV Total energy + Delta-G solvation = -2626.731237 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 270.963 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.84021 -40.65971 -37.56889 -34.61453 -34.34884 -33.43486 -30.76522 -28.11752 -25.67400 -24.56157 -22.14848 -20.27480 -19.28673 -18.27765 -17.46356 -17.11748 -16.92868 -15.99118 -15.39423 -15.27707 -14.59823 -14.48472 -14.18327 -13.47910 -13.40898 -12.50879 -12.47669 -12.37581 -11.88856 -11.60817 -11.54756 -11.08497 -10.87729 -10.75206 -10.14478 -8.60488 -6.46260 -0.71145 -0.27533 0.28464 1.32083 1.35122 1.52771 1.58208 2.09386 2.26084 2.46780 2.90517 3.18033 3.49818 3.55826 3.78926 3.83518 4.35636 4.58438 4.81591 5.15672 5.39016 5.80787 6.37201 6.50491 6.73021 7.41880 8.51423 Molecular weight = 270.96amu Principal moments of inertia in cm(-1) A = 0.049955 B = 0.004971 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.364921 B = 5631.805981 C = 6182.328491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 0.979 3.021 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.242 1.242 7 C -0.406 4.406 8 H 0.061 0.939 9 O -0.239 6.239 10 C 0.454 3.546 11 O -0.566 6.566 12 C -0.158 4.158 13 C 0.165 3.835 14 N -0.483 5.483 15 C 0.164 3.836 16 C -0.155 4.155 17 Br -0.004 7.004 18 C 0.005 3.995 19 H 0.293 0.707 20 H 0.181 0.819 21 H 0.208 0.792 22 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.587 -5.189 0.045 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.181 4.181 3 Si 0.797 3.203 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.165 1.165 7 C -0.482 4.482 8 H 0.079 0.921 9 O -0.147 6.147 10 C 0.302 3.698 11 O -0.463 6.463 12 C -0.162 4.162 13 C 0.008 3.992 14 N -0.192 5.192 15 C 0.006 3.994 16 C -0.236 4.236 17 Br 0.081 6.919 18 C -0.022 4.022 19 H 0.103 0.897 20 H 0.198 0.802 21 H 0.225 0.775 22 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 22.026 -5.157 0.050 22.622 hybrid contribution -1.479 -0.302 -0.018 1.510 sum 20.547 -5.458 0.032 21.260 Atomic orbital electron populations 1.69676 1.07685 1.30611 1.46607 1.25602 0.95967 1.02786 0.93777 0.85148 0.79455 0.75533 0.80142 1.18148 1.18935 1.16519 1.20368 0.77170 0.96094 1.54554 0.92076 1.83497 1.22439 1.31455 1.77339 1.21040 0.88960 0.82006 0.77840 1.90673 1.67581 1.36960 1.51131 1.20101 0.89760 0.96403 1.09954 1.23468 0.89239 0.98423 0.88052 1.68041 1.09135 1.28357 1.13655 1.23711 1.02439 0.84892 0.88394 1.22921 0.94350 0.95527 1.10827 1.96777 1.73607 1.23882 1.97657 1.21725 0.93288 0.97849 0.89340 0.89739 0.80239 0.77509 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.32 13.96 21.63 0.30 -53.02 14 2 C 0.02 1.13 5.50 84.89 0.47 1.60 14 3 Si 0.98 41.38 28.62 68.60 1.96 43.34 14 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 14 5 H -0.26 -10.51 7.11 99.48 0.71 -9.80 14 6 H -0.24 -9.55 7.11 99.48 0.71 -8.84 14 7 C -0.41 -24.36 10.11 67.96 0.69 -23.68 14 8 H 0.06 4.18 7.09 -2.91 -0.02 4.16 14 9 O -0.24 -12.34 7.85 11.24 0.09 -12.26 14 10 C 0.45 21.62 7.84 70.31 0.55 22.17 14 11 O -0.57 -30.85 15.67 19.82 0.31 -30.54 14 12 C -0.16 -5.60 5.89 -20.01 -0.12 -5.72 14 13 C 0.17 5.05 10.79 85.06 0.92 5.97 14 14 N -0.48 -12.56 10.34 -194.62 -2.01 -14.57 14 15 C 0.16 3.41 10.93 84.72 0.93 4.33 14 16 C -0.15 -3.55 6.24 22.36 0.14 -3.41 14 17 Br 0.00 -0.07 33.73 -20.37 -0.69 -0.76 14 18 C 0.01 0.16 9.48 22.77 0.22 0.38 14 19 H 0.29 15.42 8.31 -92.71 -0.77 14.65 14 20 H 0.18 5.33 7.62 -2.91 -0.02 5.31 14 21 H 0.21 2.60 8.06 -2.91 -0.02 2.58 14 22 H 0.15 4.63 7.74 -2.91 -0.02 4.61 14 Total: -1.00 -68.10 237.08 5.01 -63.09 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: 1.26 Total: 3.08 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 3.79 Total: 1.64 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -1.71 Total: -67.59 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: 0.40 Total: -42.80 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.96 Total: 43.34 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -0.69 Total: -0.76 kcal Total: -68.10 5.01 -63.09 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060570573.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.960 kcal (2) G-P(sol) polarization free energy of solvation -68.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds