Wall clock time and date at job start Mon Mar 30 2020 00:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47040 * 2 1 4 4 C 1.50695 * 109.47043 * 119.99931 * 2 1 3 5 5 H 1.08003 * 120.00537 * 119.99831 * 4 2 1 6 6 C 1.37880 * 120.00131 * 300.00505 * 4 2 1 7 7 N 1.31518 * 119.99961 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00302 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47126 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46904 * 119.99492 * 8 6 4 11 11 H 1.48490 * 109.47194 * 239.99607 * 8 6 4 12 12 N 1.46497 * 109.47063 * 240.00003 * 2 1 3 13 13 C 1.38449 * 120.00281 * 85.00236 * 12 2 1 14 14 N 1.32488 * 119.20264 * 359.72517 * 13 12 2 15 15 C 1.32273 * 120.74723 * 180.27919 * 14 13 12 16 16 C 1.38684 * 119.18824 * 0.02562 * 15 14 13 17 17 Br 1.89098 * 120.72938 * 180.02562 * 16 15 14 18 18 C 1.38676 * 118.53983 * 359.97438 * 16 15 14 19 19 N 1.32277 * 119.18413 * 0.02562 * 18 16 15 20 20 H 1.08993 * 109.47594 * 299.99998 * 1 2 3 21 21 H 1.09008 * 109.46985 * 60.00160 * 1 2 3 22 22 H 1.09005 * 109.47463 * 179.97438 * 1 2 3 23 23 H 0.96992 * 120.00038 * 180.02562 * 7 6 4 24 24 H 0.97000 * 120.00119 * 265.00141 * 12 2 1 25 25 H 1.08006 * 120.40927 * 180.02562 * 15 14 13 26 26 H 1.07995 * 120.40651 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2394 2.4827 7 7 0.9433 0.8302 2.6034 8 14 2.3211 -1.1203 4.0080 9 1 3.1453 -2.2877 3.6039 10 1 3.1464 -0.1873 4.8165 11 1 1.1659 -1.5866 4.8160 12 7 2.0183 -0.6906 -1.1962 13 6 2.1506 0.0000 -2.3888 14 7 1.8258 1.2838 -2.4318 15 6 1.9351 1.9716 -3.5563 16 6 2.3952 1.3327 -4.6980 17 35 2.5690 2.2743 -6.3287 18 6 2.7261 -0.0116 -4.6172 19 7 2.5932 -0.6401 -3.4609 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 0.7093 1.1617 3.4843 24 1 2.2490 -1.6318 -1.1526 25 1 1.6692 3.0180 -3.5851 26 1 3.0871 -0.5389 -5.4877 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067371087.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:54 Heat of formation + Delta-G solvation = 53.227549 kcal Electronic energy + Delta-G solvation = -13052.334684 eV Core-core repulsion = 10598.558019 eV Total energy + Delta-G solvation = -2453.776665 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.002 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.53862 -36.10153 -33.40709 -33.16235 -31.76578 -29.55638 -27.73047 -25.33650 -24.42394 -22.80482 -20.55917 -18.12905 -17.06837 -16.24432 -15.10273 -14.91580 -14.77518 -14.08722 -13.60428 -13.24863 -12.54431 -12.20638 -11.50350 -11.15069 -10.99116 -10.89881 -10.65871 -10.55046 -10.42698 -10.33455 -10.25725 -9.46517 -9.10213 -8.74220 -8.54734 -7.37439 -6.20882 -4.30091 1.33909 1.45760 1.78244 3.19799 3.27733 3.30715 3.60826 4.18989 4.29122 4.50934 4.77676 5.12056 5.19943 5.24718 5.87472 6.34140 6.72540 6.90817 7.02120 7.14306 7.41192 7.58893 7.61572 7.82757 8.05175 8.35820 8.63587 8.90614 9.37002 10.85170 Molecular weight = 271.00amu Principal moments of inertia in cm(-1) A = 0.064249 B = 0.004116 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.699433 B = 6801.357298 C = 6972.069593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.272 3.728 3 H 0.057 0.943 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.658 5.658 13 C 0.575 3.425 14 N -0.550 5.550 15 C 0.230 3.770 16 C -0.296 4.296 17 Br -0.051 7.051 18 C 0.228 3.772 19 N -0.579 5.579 20 H 0.093 0.907 21 H 0.015 0.985 22 H 0.026 0.974 23 H 0.265 0.735 24 H 0.406 0.594 25 H 0.167 0.833 26 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.212 2.561 -15.962 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.170 3.830 3 H 0.075 0.925 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.285 5.285 13 C 0.218 3.782 14 N -0.273 5.273 15 C 0.057 3.943 16 C -0.385 4.385 17 Br 0.031 6.969 18 C 0.056 3.944 19 N -0.303 5.303 20 H 0.112 0.888 21 H 0.034 0.966 22 H 0.045 0.955 23 H 0.075 0.925 24 H 0.242 0.758 25 H 0.184 0.816 26 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.998 2.534 -15.162 15.502 hybrid contribution 0.408 -0.517 0.374 0.757 sum 2.407 2.018 -14.788 15.118 Atomic orbital electron populations 1.22103 0.98114 0.99245 1.01035 1.18950 0.91176 0.94104 0.78781 0.92482 1.21236 1.32717 1.13483 0.90145 0.91898 1.24859 0.94688 0.94943 0.99036 1.69899 1.35729 1.22347 1.23961 0.86354 0.78648 0.79560 0.82341 1.19684 1.20784 1.20782 1.45497 1.64269 1.12665 1.06067 1.19772 0.85753 0.85709 0.86993 1.68258 1.23904 1.07569 1.27565 1.22949 0.86567 0.99403 0.85365 1.22972 1.21772 0.98712 0.95093 1.96581 1.97684 1.75318 1.27269 1.22772 0.87764 0.89197 0.94661 1.68111 1.23462 1.39360 0.99386 0.88828 0.96559 0.95485 0.92502 0.75766 0.81600 0.81755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.27 37.16 0.34 -3.17 15 2 C 0.27 6.69 2.55 -69.09 -0.18 6.51 15 3 H 0.06 1.57 7.51 -51.93 -0.39 1.18 15 4 C -0.54 -14.06 8.73 -34.44 -0.30 -14.36 15 5 H 0.06 1.61 7.74 -52.48 -0.41 1.20 15 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 15 7 N -0.88 -24.12 11.32 55.43 0.63 -23.49 15 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 15 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 12 N -0.66 -14.15 5.22 -56.92 -0.30 -14.45 15 13 C 0.57 11.63 8.40 -322.76 -2.71 8.91 15 14 N -0.55 -10.91 9.20 -13.90 -0.13 -11.04 15 15 C 0.23 3.65 11.08 -17.20 -0.19 3.46 15 16 C -0.30 -4.20 6.27 -39.25 -0.25 -4.44 15 17 Br -0.05 -0.58 33.76 -68.01 -2.30 -2.87 15 18 C 0.23 3.35 11.08 -17.20 -0.19 3.16 15 19 N -0.58 -10.41 10.46 -13.91 -0.15 -10.56 15 20 H 0.09 2.44 6.07 -51.93 -0.32 2.12 15 21 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 15 22 H 0.03 0.62 8.14 -51.93 -0.42 0.19 15 23 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 24 H 0.41 8.16 8.65 -40.82 -0.35 7.81 15 25 H 0.17 2.15 8.06 -52.48 -0.42 1.72 15 26 H 0.17 1.85 8.06 -52.49 -0.42 1.43 15 LS Contribution 254.18 15.07 3.83 3.83 Total: -1.00 -27.57 254.18 -9.29 -36.86 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.29 Total: 4.55 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -3.57 Total: 1.77 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.06 Total: -59.53 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.30 Total: -2.87 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.57 -9.29 -36.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067371087.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.086 kcal (2) G-P(sol) polarization free energy of solvation -27.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds