Wall clock time and date at job start Mon Mar 30 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99846 * 2 1 4 4 H 1.48502 * 109.46896 * 240.00193 * 3 2 1 5 5 H 1.48503 * 109.46903 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47331 * 119.99677 * 3 2 1 7 7 C 1.37873 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00528 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47573 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.47511 * 179.97438 * 10 9 7 12 12 C 1.35925 * 116.99622 * 179.97438 * 11 10 9 13 13 C 1.38700 * 120.06187 * 0.02562 * 12 11 10 14 14 C 1.38165 * 119.95468 * 179.97438 * 13 12 11 15 15 N 1.47999 * 119.96006 * 180.02562 * 14 13 12 16 16 O 1.21807 * 120.00384 * 359.97438 * 15 14 13 17 17 O 1.21800 * 120.00165 * 180.02562 * 15 14 13 18 18 C 1.38278 * 120.07341 * 359.97438 * 14 13 12 19 19 C 1.38238 * 120.12142 * 0.02562 * 18 14 13 20 20 C 1.38252 * 120.04399 * 359.97438 * 19 18 14 21 21 Cl 1.73603 * 120.03781 * 180.28170 * 20 19 18 22 22 H 0.96996 * 119.99719 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47736 * 59.99100 * 9 7 2 24 24 H 1.09008 * 109.46678 * 299.99826 * 9 7 2 25 25 H 1.08997 * 109.47246 * 59.99446 * 10 9 7 26 26 H 1.09008 * 109.46910 * 299.99602 * 10 9 7 27 27 H 1.07995 * 120.02357 * 359.95779 * 13 12 11 28 28 H 1.08003 * 119.93011 * 179.97438 * 18 14 13 29 29 H 1.08000 * 119.97675 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 8 1.5309 -4.8996 0.0024 12 6 2.2714 -6.0395 0.0030 13 6 3.6565 -5.9682 0.0036 14 6 4.4070 -7.1283 0.0048 15 7 5.8850 -7.0524 0.0060 16 8 6.4392 -5.9677 0.0054 17 8 6.5473 -8.0746 0.0065 18 6 3.7786 -8.3601 0.0059 19 6 2.3983 -8.4347 0.0054 20 6 1.6425 -7.2770 0.0042 21 17 -0.0910 -7.3709 0.0109 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5566 0.8904 25 1 2.8714 -3.6038 0.8922 26 1 2.8727 -3.6047 -0.8878 27 1 4.1482 -5.0067 0.0029 28 1 4.3675 -9.2654 0.0064 29 1 1.9099 -9.3980 0.0067 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070089128.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:58 Heat of formation + Delta-G solvation = -47.065220 kcal Electronic energy + Delta-G solvation = -17679.220040 eV Core-core repulsion = 14403.229288 eV Total energy + Delta-G solvation = -3275.990751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.38174 -41.50708 -39.01282 -37.76352 -37.71847 -35.53867 -33.11731 -32.53745 -31.20643 -27.92559 -27.02434 -24.51418 -23.60196 -22.63622 -20.86693 -19.85444 -18.88403 -18.72990 -18.23105 -17.55382 -17.39221 -17.28417 -16.53318 -15.53977 -15.01627 -14.91493 -14.36184 -13.99258 -13.65075 -13.48303 -13.03036 -12.96446 -12.80048 -12.75209 -12.56491 -12.36565 -12.35750 -12.09453 -11.84495 -11.70950 -11.47707 -10.63740 -10.55564 -9.72251 -8.29124 -6.42550 -1.46717 -0.23578 0.07809 0.17199 0.80766 1.40520 1.43386 1.51188 1.88632 1.97371 2.39633 3.06018 3.18494 3.29397 3.43319 3.78894 3.96825 4.13961 4.18683 4.33122 4.47659 4.63104 4.65615 4.92313 5.16567 5.28877 5.42180 5.64068 5.97865 6.07452 6.39836 6.71896 7.27933 8.83266 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.004986 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.008469 B = 5614.713303 C = 7241.272011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.070 0.930 9 C 0.032 3.968 10 C 0.075 3.925 11 O -0.309 6.309 12 C 0.133 3.867 13 C -0.152 4.152 14 C -0.014 4.014 15 N 0.028 4.972 16 O -0.206 6.206 17 O -0.129 6.129 18 C -0.068 4.068 19 C -0.051 4.051 20 C -0.034 4.034 21 Cl -0.030 7.030 22 H 0.267 0.733 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.157 0.843 28 H 0.196 0.804 29 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.967 -19.534 0.016 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.587 4.587 8 H 0.088 0.912 9 C -0.005 4.005 10 C 0.001 3.999 11 O -0.222 6.222 12 C 0.084 3.916 13 C -0.172 4.172 14 C -0.097 4.097 15 N 0.546 4.454 16 O -0.410 6.410 17 O -0.355 6.355 18 C -0.087 4.087 19 C -0.069 4.069 20 C -0.062 4.062 21 Cl 0.000 7.000 22 H 0.076 0.924 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.175 0.825 28 H 0.213 0.787 29 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.723 -19.299 0.018 19.655 hybrid contribution 0.519 1.443 -0.002 1.533 sum 4.242 -17.856 0.016 18.353 Atomic orbital electron populations 1.70093 1.07896 1.28309 1.50406 1.25953 0.95763 1.03443 0.94127 0.85414 0.78198 0.77562 0.79401 1.18968 1.20778 1.18957 1.21361 0.93851 0.91060 1.52428 0.91186 1.18923 0.94361 0.90728 0.96505 1.23139 0.95841 0.79650 1.01271 1.86276 1.35854 1.13099 1.86991 1.18757 0.88839 0.87640 0.96358 1.21011 0.92424 1.00086 1.03669 1.21012 0.78344 0.97081 1.13229 1.43770 1.04122 1.00274 0.97223 1.94612 1.73807 1.16696 1.55931 1.94476 1.64913 1.24963 1.51154 1.21292 0.94812 0.96398 0.96234 1.21364 0.91263 0.98316 0.95976 1.20966 0.87544 0.92260 1.05444 1.98426 1.06950 1.98399 1.96266 0.92403 0.97843 0.97849 0.91435 0.91427 0.82544 0.78739 0.77669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.29 21.45 0.28 -54.84 15 2 C 0.01 0.35 5.46 84.65 0.46 0.81 15 3 Si 0.97 42.88 29.54 68.60 2.03 44.91 15 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 15 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 6 H -0.26 -11.22 7.11 99.48 0.71 -10.52 15 7 C -0.55 -30.02 9.11 25.60 0.23 -29.79 15 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 15 9 C 0.03 1.65 5.34 29.85 0.16 1.81 15 10 C 0.07 2.98 4.68 71.98 0.34 3.32 15 11 O -0.31 -11.31 9.60 -92.71 -0.89 -12.20 15 12 C 0.13 3.82 6.68 22.52 0.15 3.97 15 13 C -0.15 -4.16 8.54 22.36 0.19 -3.97 15 14 C -0.01 -0.32 6.85 36.37 0.25 -0.07 15 15 N 0.03 0.77 4.45 -46.49 -0.21 0.57 15 16 O -0.21 -6.55 18.45 18.88 0.35 -6.21 15 17 O -0.13 -3.26 18.44 18.89 0.35 -2.91 15 18 C -0.07 -1.04 9.55 22.28 0.21 -0.83 15 19 C -0.05 -0.70 9.83 22.27 0.22 -0.48 15 20 C -0.03 -0.76 6.33 22.41 0.14 -0.62 15 21 Cl -0.03 -0.69 28.50 -2.72 -0.08 -0.77 15 22 H 0.27 14.90 8.31 -92.71 -0.77 14.13 15 23 H 0.00 0.18 8.14 -2.38 -0.02 0.16 15 24 H 0.00 0.17 8.14 -2.38 -0.02 0.15 15 25 H 0.07 2.54 7.66 -2.39 -0.02 2.52 15 26 H 0.07 2.54 7.66 -2.38 -0.02 2.52 15 27 H 0.16 4.59 5.85 -2.91 -0.02 4.58 15 28 H 0.20 1.71 7.60 -2.91 -0.02 1.69 15 29 H 0.21 1.07 8.06 -2.91 -0.02 1.05 15 Total: -1.00 -64.89 285.14 5.38 -59.51 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: 1.19 Total: -2.22 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 2.36 Total: -25.84 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.08 Total: -54.27 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.19 Total: -21.32 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -64.89 5.38 -59.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070089128.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.447 kcal (2) G-P(sol) polarization free energy of solvation -64.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds