Wall clock time and date at job start Mon Mar 30 2020 01:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00332 * 2 1 4 4 H 1.48497 * 109.47475 * 270.00489 * 3 2 1 5 5 H 1.48501 * 109.46943 * 30.00186 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00344 * 3 2 1 7 7 C 1.37882 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00172 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99636 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40162 * 71.36363 * 9 7 2 11 11 O 1.42099 * 106.40310 * 298.43989 * 9 7 2 12 12 N 1.65597 * 107.21640 * 184.89979 * 9 7 2 13 13 C 1.39012 * 120.00054 * 298.51506 * 12 9 7 14 14 C 1.39243 * 119.92519 * 133.77128 * 13 12 9 15 15 C 1.37106 * 120.07381 * 180.25263 * 14 13 12 16 16 C 1.39856 * 119.92374 * 359.49867 * 15 14 13 17 17 C 1.47388 * 120.07490 * 180.25333 * 16 15 14 18 18 O 1.21514 * 120.00189 * 180.26808 * 17 16 15 19 19 O 1.34762 * 119.99876 * 0.26946 * 17 16 15 20 20 C 1.39850 * 119.85492 * 0.52210 * 16 15 14 21 21 C 1.37108 * 119.92363 * 359.73227 * 20 16 15 22 22 H 0.97003 * 119.99816 * 359.97438 * 1 2 3 23 23 H 0.96999 * 119.99967 * 118.50852 * 12 9 7 24 24 H 1.08002 * 119.96299 * 359.97409 * 14 13 12 25 25 H 1.08003 * 120.04004 * 179.72321 * 15 14 13 26 26 H 0.96695 * 117.00365 * 179.97438 * 19 17 16 27 27 H 1.08000 * 120.04362 * 179.70389 * 20 16 15 28 28 H 1.08001 * 119.96443 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.5450 -2.8494 -1.2920 11 8 0.3610 -2.7432 1.1984 12 7 2.2431 -3.9326 0.1339 13 6 3.2123 -4.0959 -0.8493 14 6 4.5430 -4.2886 -0.4877 15 6 5.5022 -4.4447 -1.4549 16 6 5.1410 -4.4208 -2.8058 17 6 6.1685 -4.5940 -3.8482 18 8 5.8540 -4.5681 -5.0217 19 8 7.4568 -4.7810 -3.4999 20 6 3.8036 -4.2266 -3.1656 21 6 2.8502 -4.0659 -2.1934 22 1 -0.4850 0.8401 0.0004 23 1 2.2229 -4.5289 0.8987 24 1 4.8207 -4.3105 0.5558 25 1 6.5349 -4.5897 -1.1739 26 1 8.0945 -4.8901 -4.2186 27 1 3.5221 -4.2028 -4.2080 28 1 1.8173 -3.9154 -2.4705 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082681721.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:07 Heat of formation + Delta-G solvation = -157.927753 kcal Electronic energy + Delta-G solvation = -18292.350543 eV Core-core repulsion = 15013.596138 eV Total energy + Delta-G solvation = -3278.754405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.039 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.31849 -38.84249 -36.07069 -35.49632 -34.60848 -34.21557 -33.19444 -30.92111 -29.31804 -26.26403 -24.03477 -22.64190 -21.05642 -19.27806 -18.14638 -17.92600 -17.36419 -16.90512 -16.39411 -15.56327 -15.11065 -14.85478 -14.37373 -14.03524 -13.82430 -13.45789 -13.27249 -12.69132 -12.42215 -12.13524 -11.58924 -11.43579 -11.28308 -11.22441 -10.86252 -10.67117 -10.57858 -10.54356 -10.35735 -9.95065 -9.34643 -9.01573 -8.89138 -8.09581 -6.82105 -5.45906 0.80317 1.59155 1.99869 2.65971 3.02260 3.07406 3.09210 3.15175 3.93667 3.96823 4.37867 4.55003 4.94221 5.08634 5.20471 5.41858 5.57965 5.61141 5.77551 6.12238 6.25658 6.33412 6.36394 6.48691 6.55385 6.83017 7.02520 7.21213 7.58845 7.83963 7.91616 8.76975 10.12256 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.006109 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.758846 B = 4582.510745 C = 5165.374384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.134 3.866 3 Si 0.923 3.077 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.014 5.014 8 H 0.105 0.895 9 S 2.700 3.300 10 O -0.995 6.995 11 O -0.990 6.990 12 N -1.073 6.073 13 C 0.224 3.776 14 C -0.164 4.164 15 C -0.042 4.042 16 C -0.167 4.167 17 C 0.532 3.468 18 O -0.522 6.522 19 O -0.516 6.516 20 C -0.026 4.026 21 C -0.165 4.165 22 H 0.293 0.707 23 H 0.416 0.584 24 H 0.134 0.866 25 H 0.136 0.864 26 H 0.410 0.590 27 H 0.140 0.860 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.551 -7.404 -2.156 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.085 4.085 3 Si 0.747 3.253 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.148 5.148 8 H 0.123 0.877 9 S 2.802 3.198 10 O -0.985 6.985 11 O -0.980 6.980 12 N -0.816 5.816 13 C 0.124 3.876 14 C -0.186 4.186 15 C -0.061 4.061 16 C -0.170 4.170 17 C 0.378 3.622 18 O -0.413 6.413 19 O -0.327 6.327 20 C -0.045 4.045 21 C -0.186 4.186 22 H 0.103 0.897 23 H 0.250 0.750 24 H 0.152 0.848 25 H 0.154 0.846 26 H 0.268 0.732 27 H 0.157 0.843 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.967 -7.298 -2.286 12.563 hybrid contribution 1.432 0.934 -0.004 1.710 sum 11.400 -6.364 -2.289 13.255 Atomic orbital electron populations 1.69884 1.06768 1.31024 1.39505 1.24740 0.94515 1.00883 0.88323 0.86106 0.80133 0.79687 0.79383 1.18997 1.19868 1.18554 1.30360 1.06115 1.10910 1.67428 0.87695 1.01103 0.72069 0.73363 0.73291 1.93329 1.75748 1.87012 1.42367 1.93403 1.68647 1.87207 1.48791 1.54118 1.47204 1.49391 1.30907 1.17771 0.88479 0.92853 0.88452 1.21048 0.91368 1.05795 1.00339 1.21067 0.99679 0.94268 0.91063 1.18949 0.92213 1.13765 0.92034 1.20904 0.81428 0.71904 0.87983 1.90878 1.82062 1.47980 1.20342 1.84583 1.18922 1.84600 1.44619 1.20987 0.90203 0.92838 1.00433 1.21889 1.03016 1.02679 0.90989 0.89660 0.74964 0.84773 0.84569 0.73241 0.84252 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.88 13.10 55.43 0.73 -23.16 15 2 C 0.13 3.62 5.46 -17.82 -0.10 3.52 15 3 Si 0.92 20.10 29.54 -169.99 -5.02 15.08 15 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 7 C -1.01 -26.80 9.60 30.60 0.29 -26.51 15 8 H 0.10 2.57 7.81 -52.49 -0.41 2.16 15 9 S 2.70 67.34 4.94 -107.50 -0.53 66.81 15 10 O -0.99 -26.66 15.12 -57.17 -0.86 -27.52 15 11 O -0.99 -27.46 17.92 -57.17 -1.02 -28.49 15 12 N -1.07 -19.95 5.73 32.41 0.19 -19.76 15 13 C 0.22 3.90 6.12 -83.86 -0.51 3.39 15 14 C -0.16 -2.34 9.93 -39.62 -0.39 -2.73 15 15 C -0.04 -0.55 9.58 -39.39 -0.38 -0.93 15 16 C -0.17 -2.44 5.88 -104.97 -0.62 -3.06 15 17 C 0.53 7.26 8.26 34.45 0.28 7.55 15 18 O -0.52 -8.46 17.12 -19.28 -0.33 -8.79 15 19 O -0.52 -5.11 12.67 -40.66 -0.52 -5.62 15 20 C -0.03 -0.41 9.56 -39.39 -0.38 -0.79 15 21 C -0.16 -2.97 9.18 -39.62 -0.36 -3.33 15 22 H 0.29 7.46 8.31 -40.82 -0.34 7.12 15 23 H 0.42 6.29 8.95 -34.47 -0.31 5.98 15 24 H 0.13 1.58 8.06 -52.49 -0.42 1.16 15 25 H 0.14 1.42 7.60 -52.48 -0.40 1.02 15 26 H 0.41 2.13 9.11 45.56 0.42 2.54 15 27 H 0.14 2.08 7.64 -52.49 -0.40 1.68 15 28 H 0.17 3.34 5.67 -52.49 -0.30 3.04 15 LS Contribution 274.19 15.07 4.13 4.13 Total: -1.00 -34.76 274.19 -6.36 -41.12 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -0.96 Total: 9.08 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -2.16 Total: -22.88 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.91 Total: -42.92 kcal Atomic # 8 Polarization: -67.69 SS G_CDS: -2.73 Total: -70.43 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 67.34 SS G_CDS: -0.53 Total: 66.81 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.76 -6.36 -41.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082681721.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.805 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds