Wall clock time and date at job start Mon Mar 30 2020 01:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46900 * 110.99842 * 306.04472 * 12 2 1 14 14 C 1.38194 * 111.00072 * 70.00096 * 12 2 1 15 15 S 1.72011 * 127.34565 * 0.02562 * 14 12 2 16 16 N 1.69452 * 96.11467 * 179.97438 * 15 14 12 17 17 C 1.29514 * 108.06716 * 359.97438 * 16 15 14 18 18 Cl 1.73598 * 121.50936 * 180.02562 * 17 16 15 19 19 C 1.39007 * 127.34651 * 179.70674 * 14 12 2 20 20 C 1.43202 * 123.23372 * 0.03659 * 19 14 12 21 21 N 5.25322 * 109.58031 * 240.24806 * 2 1 3 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.09006 * 109.46886 * 60.00102 * 13 12 2 27 27 H 1.09003 * 109.47182 * 180.02562 * 13 12 2 28 28 H 1.08997 * 109.47165 * 299.99892 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 7 2.0196 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3080 14 6 1.7687 0.0506 -2.3374 15 16 0.9962 1.5846 -2.4327 16 7 1.1084 1.7389 -4.1164 17 6 1.7003 0.6834 -4.5779 18 17 1.9979 0.4796 -6.2760 19 6 2.0922 -0.2794 -3.6484 20 6 2.7604 -1.4932 -4.0101 21 7 3.2905 -2.4561 -4.2970 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7006 1.1552 3.4844 26 1 0.3489 -1.9547 -1.3695 27 1 1.8139 -2.5259 -2.2043 28 1 1.7059 -2.6220 -0.4305 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092663240.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:20 Heat of formation + Delta-G solvation = 71.321753 kcal Electronic energy + Delta-G solvation = -16216.512465 eV Core-core repulsion = 13420.700980 eV Total energy + Delta-G solvation = -2795.811485 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 271.024 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.59365 -37.87736 -36.42244 -35.91791 -33.28552 -30.74550 -29.04371 -26.87039 -25.69492 -23.99832 -21.53415 -20.87444 -18.30716 -17.54205 -16.31873 -15.85279 -15.20432 -14.81555 -14.72070 -14.24643 -13.71323 -13.14449 -13.01723 -12.85635 -12.66650 -12.02533 -11.87459 -11.57852 -11.50827 -11.25601 -11.18941 -11.09433 -10.86387 -10.54688 -10.39166 -10.32450 -9.90648 -9.45891 -8.72897 -8.48122 -7.81582 -6.36938 -4.44974 0.63979 0.97529 1.34339 1.74668 2.54401 2.97910 3.13862 3.21607 3.23602 3.57677 3.97250 4.24456 4.25417 4.96109 5.12201 5.20023 5.52214 5.68129 6.07959 6.23880 6.28024 6.33880 6.38747 6.71066 6.97925 7.24195 7.45379 7.74767 7.77721 7.90034 8.57750 9.22500 10.70001 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.005716 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.481272 B = 4897.633563 C = 5523.469743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.193 3.807 3 H 0.060 0.940 4 C -0.518 4.518 5 H 0.070 0.930 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.423 5.423 13 C 0.031 3.969 14 C 0.112 3.888 15 S 0.352 5.648 16 N -0.503 5.503 17 C 0.232 3.768 18 Cl -0.007 7.007 19 C -0.200 4.200 20 C 0.301 3.699 21 N -0.428 5.428 22 H 0.108 0.892 23 H 0.022 0.978 24 H 0.045 0.955 25 H 0.268 0.732 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 0.488 -8.470 8.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.089 3.911 3 H 0.077 0.923 4 C -0.556 4.556 5 H 0.088 0.912 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.733 3.267 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.134 5.134 13 C -0.115 4.115 14 C -0.127 4.127 15 S 0.500 5.500 16 N -0.326 5.326 17 C 0.026 3.974 18 Cl 0.021 6.979 19 C -0.224 4.224 20 C -0.016 4.016 21 N -0.105 5.105 22 H 0.126 0.874 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.850 0.919 -8.380 8.630 hybrid contribution 0.451 -1.413 0.259 1.506 sum -1.399 -0.495 -8.121 8.255 Atomic orbital electron populations 1.22636 0.98162 1.01097 1.02245 1.20020 0.91648 0.95174 0.84227 0.92283 1.20855 1.32477 1.13582 0.88733 0.91227 1.24883 0.94550 0.94942 0.99203 1.69827 1.35568 1.22417 1.24429 0.86366 0.78698 0.79969 0.81710 1.20354 1.20978 1.19705 1.58295 1.49997 1.04591 1.00470 1.22613 0.98272 0.86914 1.03716 1.25248 0.92571 1.01521 0.93379 1.84979 1.50025 1.14483 1.00532 1.75926 1.25811 1.24036 1.06782 1.21288 0.96910 0.90995 0.88180 1.98410 1.93879 1.96467 1.09170 1.15444 1.19549 0.96478 0.90976 1.24158 0.92495 0.91570 0.93328 1.81191 1.10848 1.10867 1.07634 0.87385 0.95915 0.93568 0.92236 0.92628 0.92088 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 8.07 37.16 0.30 -3.25 15 2 C 0.19 4.07 1.92 -68.86 -0.13 3.94 15 3 H 0.06 1.34 7.35 -51.93 -0.38 0.96 15 4 C -0.52 -12.25 7.97 -34.44 -0.27 -12.53 15 5 H 0.07 1.66 7.10 -52.49 -0.37 1.29 15 6 C 0.07 1.64 5.30 -17.82 -0.09 1.54 15 7 N -0.89 -21.94 11.31 55.43 0.63 -21.32 15 8 Si 0.91 19.19 29.54 -169.99 -5.02 14.17 15 9 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 11 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 12 N -0.42 -7.97 4.73 -174.00 -0.82 -8.80 15 13 C 0.03 0.52 8.59 60.06 0.52 1.04 15 14 C 0.11 1.92 5.62 -14.40 -0.08 1.84 15 15 S 0.35 5.59 19.62 -107.50 -2.11 3.48 15 16 N -0.50 -8.03 12.00 31.91 0.38 -7.65 15 17 C 0.23 3.61 7.27 -18.08 -0.13 3.48 15 18 Cl -0.01 -0.09 28.56 -51.86 -1.48 -1.57 15 19 C -0.20 -3.29 5.67 -107.23 -0.61 -3.90 15 20 C 0.30 5.11 12.54 -22.47 -0.28 4.83 15 21 N -0.43 -7.65 18.47 41.84 0.77 -6.88 15 22 H 0.11 2.38 6.06 -51.93 -0.31 2.07 15 23 H 0.02 0.39 5.41 -47.33 -0.26 0.13 15 24 H 0.05 0.87 6.33 -51.93 -0.33 0.54 15 25 H 0.27 6.38 8.31 -40.82 -0.34 6.04 15 26 H 0.06 0.87 6.21 -51.93 -0.32 0.55 15 27 H 0.06 0.99 5.65 -51.93 -0.29 0.69 15 28 H 0.10 1.72 6.86 -51.93 -0.36 1.37 15 LS Contribution 267.78 15.07 4.04 4.04 Total: -1.00 -24.25 267.78 -6.16 -30.42 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -1.76 Total: -2.88 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.79 Total: -3.01 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.96 Total: -44.64 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: 5.59 SS G_CDS: -2.11 Total: 3.48 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.48 Total: -1.57 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -24.25 -6.16 -30.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092663240.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.739 kcal (2) G-P(sol) polarization free energy of solvation -24.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds