Wall clock time and date at job start Mon Mar 30 2020 00:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.46974 * 2 1 4 4 C 1.42908 * 113.99542 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46795 * 180.02562 * 4 3 2 6 6 N 1.46903 * 109.47584 * 64.99832 * 5 4 3 7 7 C 1.46959 * 110.99969 * 66.19779 * 6 5 4 8 8 C 1.53052 * 109.36472 * 183.19393 * 7 6 5 9 9 N 1.46951 * 109.36043 * 301.59695 * 8 7 6 10 10 C 1.46906 * 110.99750 * 183.19277 * 9 8 7 11 11 H 1.09001 * 109.46851 * 291.19789 * 10 9 8 12 12 C 1.52996 * 109.47190 * 171.20522 * 10 9 8 13 13 C 1.50691 * 109.47254 * 51.20037 * 10 9 8 14 14 H 1.08004 * 120.00073 * 5.55415 * 13 10 9 15 15 C 1.37880 * 119.99971 * 185.55871 * 13 10 9 16 16 N 1.31507 * 120.00170 * 8.55247 * 15 13 10 17 17 Si 1.86806 * 119.99962 * 188.55509 * 15 13 10 18 18 H 1.48500 * 109.47047 * 84.99129 * 17 15 13 19 19 H 1.48495 * 109.47231 * 204.99307 * 17 15 13 20 20 H 1.48498 * 109.46918 * 324.99352 * 17 15 13 21 21 C 1.46958 * 110.88385 * 59.32526 * 9 8 7 22 22 C 1.46955 * 111.00461 * 190.00208 * 6 5 4 23 23 H 1.09005 * 109.48659 * 296.77566 * 22 6 5 24 24 C 1.52996 * 109.50833 * 56.83189 * 22 6 5 25 25 H 1.09002 * 109.47461 * 300.00169 * 1 2 3 26 26 H 1.09001 * 109.47117 * 60.00191 * 1 2 3 27 27 H 1.08998 * 109.47279 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46955 * 239.99708 * 2 1 3 29 29 H 1.08998 * 109.46624 * 119.99955 * 2 1 3 30 30 H 1.08998 * 109.47221 * 60.00009 * 4 3 2 31 31 H 1.08997 * 109.46865 * 299.99578 * 4 3 2 32 32 H 1.09005 * 109.47348 * 305.00238 * 5 4 3 33 33 H 1.09001 * 109.47332 * 184.99684 * 5 4 3 34 34 H 1.09005 * 109.48360 * 303.16002 * 7 6 5 35 35 H 1.08998 * 109.48848 * 63.21931 * 7 6 5 36 36 H 1.09003 * 109.48376 * 181.63450 * 8 7 6 37 37 H 1.08995 * 109.49041 * 61.56560 * 8 7 6 38 38 H 1.08998 * 109.47875 * 64.95227 * 12 10 9 39 39 H 1.08996 * 109.47101 * 184.95610 * 12 10 9 40 40 H 1.09005 * 109.46947 * 304.95337 * 12 10 9 41 41 H 0.97002 * 120.00328 * 180.02562 * 16 15 13 42 42 H 1.09007 * 109.48520 * 60.64014 * 21 9 8 43 43 H 1.08997 * 109.49100 * 180.68400 * 21 9 8 44 44 H 1.08997 * 109.47179 * 179.90830 * 24 22 6 45 45 H 1.09001 * 109.47355 * 299.90443 * 24 22 6 46 46 H 1.09001 * 109.47084 * 59.90344 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9382 0.0001 6 7 3.3867 3.5617 1.2559 7 6 4.1190 3.0071 2.4031 8 6 3.5786 3.6230 3.6958 9 7 3.7249 5.0841 3.6377 10 6 3.2862 5.7074 4.8935 11 1 2.2060 5.6016 4.9937 12 6 3.6541 7.1924 4.8815 13 6 3.9672 5.0306 6.0550 14 1 4.7231 4.2804 5.8753 15 6 3.6252 5.3689 7.3471 16 7 2.5938 6.1537 7.5703 17 14 4.6269 4.7125 8.7808 18 1 5.7988 5.5951 9.0110 19 1 3.7825 4.6823 10.0019 20 1 5.0957 3.3384 8.4690 21 6 2.9926 5.6387 2.4906 22 6 3.5329 5.0228 1.1978 23 1 4.5866 5.2786 1.0858 24 6 2.7456 5.5680 0.0047 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9766 -0.8908 31 1 3.8340 0.9764 0.8892 32 1 3.3492 3.4419 -0.8412 33 1 4.9082 3.0254 -0.0898 34 1 3.9850 1.9257 2.4316 35 1 5.1792 3.2400 2.3047 36 1 4.1399 3.2348 4.5458 37 1 2.5250 3.3672 3.8078 38 1 3.0936 7.6994 4.0960 39 1 3.4086 7.6354 5.8467 40 1 4.7223 7.3006 4.6932 41 1 2.3534 6.3921 8.4793 42 1 1.9323 5.4056 2.5890 43 1 3.1262 6.7200 2.4622 44 1 2.8531 6.6518 -0.0369 45 1 3.1306 5.1292 -0.9159 46 1 1.6921 5.3113 0.1166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106777025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:29 Heat of formation + Delta-G solvation = -55.781756 kcal Electronic energy + Delta-G solvation = -22212.032316 eV Core-core repulsion = 19136.005463 eV Total energy + Delta-G solvation = -3076.026853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59935 -38.84898 -37.24037 -34.66114 -33.56129 -32.56318 -31.43099 -29.37043 -28.32833 -27.09536 -25.99313 -23.60990 -23.13952 -22.74501 -21.49331 -20.50035 -18.37081 -17.63593 -17.53351 -16.95981 -16.34790 -16.17991 -15.87245 -15.60562 -15.23171 -15.01056 -14.68914 -14.32523 -14.16319 -13.70706 -13.64583 -13.29870 -13.07835 -12.90620 -12.82424 -12.65949 -12.58856 -12.48969 -12.40006 -12.22260 -12.04679 -12.01530 -11.92000 -11.89698 -11.45147 -11.09598 -10.75541 -10.54982 -10.39465 -9.17973 -8.95124 -8.14726 -6.23301 1.41599 1.43273 1.52271 2.42066 2.83602 2.96851 3.16138 3.31121 3.92339 4.02461 4.12840 4.20296 4.28058 4.34874 4.37250 4.43929 4.49568 4.52641 4.55421 4.61105 4.69543 4.71164 4.79744 4.82780 4.89631 4.91879 4.96295 5.00941 5.06478 5.08216 5.13142 5.19410 5.22854 5.29531 5.38426 5.48158 5.69559 5.74118 6.13509 6.17838 6.20997 6.38675 6.48289 6.74185 6.92084 7.45064 8.94561 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.004684 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.481281 B = 5976.968791 C = 6659.289192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.399 6.399 4 C 0.066 3.934 5 C 0.051 3.949 6 N -0.539 5.539 7 C 0.070 3.930 8 C 0.073 3.927 9 N -0.537 5.537 10 C 0.214 3.786 11 H -0.040 1.040 12 C -0.111 4.111 13 C -0.521 4.521 14 H 0.061 0.939 15 C 0.013 3.987 16 N -0.923 5.923 17 Si 0.959 3.041 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.063 3.937 22 C 0.092 3.908 23 H 0.045 0.955 24 C -0.135 4.135 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.002 0.998 38 H 0.030 0.970 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.262 0.738 42 H 0.008 0.992 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -9.379 -17.783 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.318 6.318 4 C -0.010 4.010 5 C -0.076 4.076 6 N -0.265 5.265 7 C -0.058 4.058 8 C -0.056 4.056 9 N -0.261 5.261 10 C 0.107 3.893 11 H -0.022 1.022 12 C -0.169 4.169 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.186 4.186 16 N -0.562 5.562 17 Si 0.784 3.216 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.066 4.066 22 C -0.017 4.017 23 H 0.062 0.938 24 C -0.193 4.193 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.020 0.980 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.026 0.974 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.334 -9.136 -17.636 19.906 hybrid contribution 0.212 -0.262 1.392 1.432 sum 1.546 -9.398 -16.244 18.830 Atomic orbital electron populations 1.21733 0.93617 1.02991 1.02234 1.22574 0.95971 0.83622 1.00388 1.87992 1.21537 1.26900 1.95412 1.22611 0.81481 0.96315 1.00636 1.22296 0.98602 0.94121 0.92570 1.62106 1.57003 1.04345 1.03034 1.22109 0.95298 0.98916 0.89491 1.21920 0.97521 0.88657 0.97502 1.62271 1.55842 1.04416 1.03610 1.19048 0.91507 0.92364 0.86376 1.02229 1.21526 0.99106 0.97002 0.99248 1.21387 1.21410 1.22307 0.90847 0.92078 1.25731 0.95669 0.95753 1.01421 1.70097 1.26737 1.38062 1.21317 0.85563 0.78660 0.78998 0.78386 1.19871 1.21143 1.19172 1.22184 0.94457 0.99100 0.90827 1.21599 0.98251 0.87215 0.94631 0.93751 1.21812 1.00039 1.01101 0.96348 0.93574 0.92085 0.89271 0.92023 0.93773 0.90873 0.93626 0.88796 0.92206 0.89753 0.94329 0.91037 0.97968 0.95090 0.93891 0.94033 0.92942 0.97376 0.90741 0.91103 0.90560 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.28 71.98 0.74 -1.97 16 2 C 0.05 0.99 6.66 71.98 0.48 1.47 16 3 O -0.40 -10.23 10.29 -148.98 -1.53 -11.76 16 4 C 0.07 1.39 6.00 71.98 0.43 1.82 16 5 C 0.05 1.16 5.11 86.30 0.44 1.60 16 6 N -0.54 -16.38 4.47 -870.47 -3.89 -20.28 16 7 C 0.07 2.30 5.42 86.31 0.47 2.76 16 8 C 0.07 3.10 5.26 86.31 0.45 3.55 16 9 N -0.54 -24.26 4.57 -874.88 -4.00 -28.26 16 10 C 0.21 11.42 1.93 44.16 0.09 11.51 16 11 H -0.04 -2.45 8.08 -2.39 -0.02 -2.47 16 12 C -0.11 -5.52 8.85 71.98 0.64 -4.88 16 13 C -0.52 -29.36 7.68 25.60 0.20 -29.16 16 14 H 0.06 3.40 6.31 -2.91 -0.02 3.38 16 15 C 0.01 0.74 5.18 84.66 0.44 1.18 16 16 N -0.92 -54.89 12.12 21.45 0.26 -54.63 16 17 Si 0.96 44.29 29.55 68.60 2.03 46.32 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 C 0.06 2.46 4.68 86.31 0.40 2.86 16 22 C 0.09 2.82 2.56 44.92 0.12 2.93 16 23 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 24 C -0.14 -3.28 8.89 71.98 0.64 -2.64 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 0.98 6.28 -2.39 -0.02 0.97 16 32 H 0.09 1.98 5.73 -2.38 -0.01 1.97 16 33 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 34 H 0.08 2.49 6.25 -2.38 -0.01 2.47 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 3.25 5.96 -2.39 -0.01 3.23 16 37 H 0.00 0.09 8.14 -2.39 -0.02 0.08 16 38 H 0.03 1.37 6.70 -2.39 -0.02 1.35 16 39 H 0.04 2.33 6.77 -2.39 -0.02 2.31 16 40 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.26 14.77 8.31 -92.71 -0.77 13.99 16 42 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 43 H 0.07 2.82 6.40 -2.39 -0.02 2.80 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.08 1.51 6.16 -2.39 -0.01 1.50 16 46 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -65.35 347.74 -0.69 -66.04 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.92 Total: 11.54 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 5.53 Total: -8.96 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -7.63 Total: -103.17 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.53 Total: -11.76 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -65.35 -0.69 -66.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106777025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.255 kcal (2) G-P(sol) polarization free energy of solvation -65.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds