Wall clock time and date at job start Mon Mar 30 2020 01:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47156 * 2 1 4 4 C 1.50700 * 109.47302 * 120.00062 * 2 1 3 5 5 H 1.07993 * 120.00524 * 119.99395 * 4 2 1 6 6 C 1.37880 * 119.99457 * 300.00052 * 4 2 1 7 7 N 1.31509 * 120.00308 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99596 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47198 * 89.99865 * 8 6 4 10 10 H 1.48509 * 109.47050 * 209.99648 * 8 6 4 11 11 H 1.48494 * 109.47487 * 329.99759 * 8 6 4 12 12 N 1.46502 * 109.46926 * 239.99965 * 2 1 3 13 13 C 1.34768 * 120.00221 * 84.99932 * 12 2 1 14 14 O 1.21569 * 120.00062 * 0.02562 * 13 12 2 15 15 C 1.47721 * 120.00268 * 179.97438 * 13 12 2 16 16 C 1.39662 * 120.11617 * 179.97438 * 15 13 12 17 17 C 1.37839 * 119.90289 * 179.74575 * 16 15 13 18 18 C 1.38642 * 120.13671 * 0.26429 * 17 16 15 19 19 F 1.35093 * 119.88889 * 179.97438 * 18 17 16 20 20 C 1.38746 * 120.22585 * 0.02562 * 18 17 16 21 21 Cl 1.73597 * 119.94822 * 180.02562 * 20 18 17 22 22 C 1.37968 * 120.09387 * 359.97438 * 20 18 17 23 23 H 1.08999 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47053 * 300.00612 * 1 2 3 25 25 H 1.09005 * 109.46969 * 60.00146 * 1 2 3 26 26 H 0.97001 * 120.00173 * 180.02562 * 7 6 4 27 27 H 0.97007 * 119.99442 * 265.00194 * 12 2 1 28 28 H 1.08002 * 120.04968 * 0.03305 * 16 15 13 29 29 H 1.08001 * 119.92701 * 180.22833 * 17 16 15 30 30 H 1.07995 * 120.06497 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3431 -0.9491 5.1121 11 1 2.4858 -2.5661 3.7120 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8584 1.1613 -2.4117 15 6 2.6399 -0.7146 -3.5631 16 6 2.7737 -0.0204 -4.7676 17 6 3.2390 -0.6731 -5.8889 18 6 3.5691 -2.0181 -5.8247 19 9 4.0242 -2.6530 -6.9269 20 6 3.4326 -2.7146 -4.6325 21 17 3.8487 -4.3984 -4.5600 22 6 2.9678 -2.0706 -3.5044 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7095 1.1619 3.4843 27 1 2.2490 -1.6319 -1.1525 28 1 2.5173 1.0275 -4.8192 29 1 3.3461 -0.1357 -6.8196 30 1 2.8613 -2.6133 -2.5768 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136153480.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:07 Heat of formation + Delta-G solvation = -86.027434 kcal Electronic energy + Delta-G solvation = -17776.405532 eV Core-core repulsion = 14511.098042 eV Total energy + Delta-G solvation = -3265.307490 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.14648 -41.23694 -39.38339 -37.62933 -36.75653 -34.46926 -32.50727 -31.89957 -30.36761 -27.34086 -25.27473 -24.26505 -22.82147 -21.33794 -19.77078 -18.76448 -17.99321 -17.69058 -16.95920 -16.91940 -16.56584 -16.00125 -15.80150 -15.21302 -14.95807 -14.57242 -14.34170 -14.11810 -13.99755 -13.66394 -12.99196 -12.90921 -12.77406 -12.56326 -12.55198 -12.26292 -12.17793 -12.10157 -11.12260 -10.96396 -10.59657 -10.24467 -9.99086 -9.72999 -8.17373 -6.34702 -0.55802 -0.12626 0.82631 1.46677 1.47016 1.57464 1.64586 2.28890 2.51017 2.56603 2.82771 3.13731 3.45736 3.60566 3.88129 4.05600 4.28164 4.56027 4.63120 4.75550 4.86947 4.93049 5.07438 5.10917 5.41985 5.43390 5.56956 5.67308 5.87732 6.08804 6.71341 6.84658 7.28505 7.43772 8.88960 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.025697 B = 0.004541 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.349516 B = 6164.034769 C = 7027.283514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.005 0.995 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.260 1.260 12 N -0.697 5.697 13 C 0.544 3.456 14 O -0.587 6.587 15 C -0.135 4.135 16 C -0.030 4.030 17 C -0.131 4.131 18 C 0.128 3.872 19 F -0.123 7.123 20 C -0.086 4.086 21 Cl -0.041 7.041 22 C -0.047 4.047 23 H 0.041 0.959 24 H 0.068 0.932 25 H 0.015 0.985 26 H 0.266 0.734 27 H 0.404 0.596 28 H 0.155 0.845 29 H 0.185 0.815 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.225 -8.566 -15.766 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.184 1.184 12 N -0.345 5.345 13 C 0.331 3.669 14 O -0.470 6.470 15 C -0.138 4.138 16 C -0.049 4.049 17 C -0.150 4.150 18 C 0.107 3.893 19 F -0.101 7.101 20 C -0.114 4.114 21 Cl -0.012 7.012 22 C -0.066 4.066 23 H 0.060 0.940 24 H 0.087 0.913 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.240 0.760 28 H 0.173 0.827 29 H 0.202 0.798 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.981 -7.821 -15.654 18.194 hybrid contribution 0.285 -0.739 0.915 1.210 sum 5.266 -8.560 -14.739 17.839 Atomic orbital electron populations 1.21909 0.98012 0.99629 0.99805 1.18437 0.91325 0.92144 0.81488 0.97751 1.21520 1.32706 1.13665 0.90695 0.90788 1.25757 0.94800 0.95558 1.02217 1.70039 1.36851 1.23856 1.24658 0.85363 0.77756 0.79219 0.78112 1.20412 1.21008 1.18403 1.46261 1.64355 1.14247 1.09641 1.18574 0.78007 0.86391 0.83922 1.90726 1.53231 1.17320 1.85699 1.19977 1.05112 0.94034 0.94699 1.21386 0.92465 1.01363 0.89677 1.21350 1.00816 0.91446 1.01377 1.17751 0.98334 0.91330 0.81862 1.91556 1.85950 1.81974 1.50659 1.20853 1.07905 0.87933 0.94675 1.98399 1.91908 1.12361 1.98575 1.21204 0.94433 0.92894 0.98065 0.94000 0.91330 0.96639 0.92503 0.75981 0.82708 0.79759 0.82501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 9.26 71.98 0.67 -6.00 16 2 C 0.27 13.61 2.56 44.25 0.11 13.73 16 3 H 0.00 0.27 7.58 -2.39 -0.02 0.25 16 4 C -0.55 -28.25 8.73 25.60 0.22 -28.03 16 5 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.92 -51.51 11.32 21.45 0.24 -51.27 16 8 Si 0.97 41.16 29.54 68.60 2.03 43.19 16 9 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 12 N -0.70 -28.08 5.02 -449.10 -2.25 -30.33 16 13 C 0.54 21.09 7.73 86.75 0.67 21.76 16 14 O -0.59 -27.54 16.01 -3.93 -0.06 -27.61 16 15 C -0.13 -3.80 5.87 -20.09 -0.12 -3.92 16 16 C -0.03 -0.69 9.59 22.52 0.22 -0.47 16 17 C -0.13 -2.31 10.01 22.27 0.22 -2.08 16 18 C 0.13 2.56 7.28 22.49 0.16 2.72 16 19 F -0.12 -2.46 16.83 44.97 0.76 -1.70 16 20 C -0.09 -1.87 6.32 22.33 0.14 -1.73 16 21 Cl -0.04 -0.85 28.60 -2.72 -0.08 -0.93 16 22 C -0.05 -1.11 9.32 22.54 0.21 -0.90 16 23 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 25 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.40 13.57 6.57 -92.70 -0.61 12.96 16 28 H 0.16 3.54 7.65 -2.91 -0.02 3.52 16 29 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.16 3.37 6.40 -2.91 -0.02 3.35 16 Total: -1.00 -63.11 285.26 4.17 -58.94 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.58 Total: 13.28 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 2.96 Total: -3.57 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -2.01 Total: -81.60 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.06 Total: -27.61 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.76 Total: -1.70 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -63.11 4.17 -58.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136153480.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.089 kcal (2) G-P(sol) polarization free energy of solvation -63.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds