Wall clock time and date at job start Mon Mar 30 2020 01:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48498 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46605 * 299.99438 * 3 2 1 6 6 H 1.48496 * 109.46902 * 59.99052 * 3 2 1 7 7 C 1.37884 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46923 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47433 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00271 * 180.02562 * 11 10 9 13 13 O 1.21557 * 119.99487 * 0.26790 * 12 11 10 14 14 C 1.47776 * 119.99773 * 179.97438 * 12 11 10 15 15 C 1.39633 * 120.14366 * 359.72079 * 14 12 11 16 16 C 1.37897 * 119.90971 * 179.77094 * 15 14 12 17 17 C 1.38392 * 120.21105 * 0.52887 * 16 15 14 18 18 C 1.38470 * 120.29127 * 359.70116 * 17 16 15 19 19 F 1.35102 * 119.95892 * 180.02562 * 18 17 16 20 20 C 1.38379 * 120.07734 * 0.04219 * 18 17 16 21 21 Cl 1.73602 * 120.09832 * 179.97438 * 20 18 17 22 22 H 0.96991 * 120.00232 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47473 * 60.00239 * 9 7 2 24 24 H 1.08999 * 109.47742 * 299.99398 * 9 7 2 25 25 H 1.08996 * 109.47407 * 59.99619 * 10 9 7 26 26 H 1.09000 * 109.46986 * 299.99847 * 10 9 7 27 27 H 0.96999 * 119.99685 * 359.97438 * 11 10 9 28 28 H 1.08002 * 120.04417 * 359.97438 * 15 14 12 29 29 H 1.08007 * 119.89454 * 180.25230 * 16 15 14 30 30 H 1.08005 * 119.85563 * 179.72242 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3962 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9309 0.0012 12 6 2.1867 -6.0981 0.0027 13 8 3.4022 -6.0980 0.0094 14 6 1.4477 -7.3778 0.0026 15 6 0.0514 -7.3813 0.0069 16 6 -0.6333 -8.5783 0.0021 17 6 0.0591 -9.7765 0.0040 18 6 1.4438 -9.7831 0.0045 19 9 2.1129 -10.9568 0.0059 20 6 2.1430 -8.5890 0.0040 21 17 3.8790 -8.5966 0.0054 22 1 -0.4850 0.8399 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6241 -2.5568 0.8903 25 1 2.8713 -3.6040 0.8922 26 1 2.8726 -3.6048 -0.8877 27 1 0.5428 -4.9309 0.0005 28 1 -0.4916 -6.4477 0.0108 29 1 -1.7133 -8.5806 0.0013 30 1 -0.4830 -10.7107 0.0047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165231344.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:00 Heat of formation + Delta-G solvation = -83.894395 kcal Electronic energy + Delta-G solvation = -17488.417634 eV Core-core repulsion = 14223.202640 eV Total energy + Delta-G solvation = -3265.214995 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.08038 -41.26033 -39.30335 -37.55927 -36.60894 -34.86474 -32.73414 -31.70820 -30.98413 -27.03531 -25.10471 -23.81312 -22.86397 -21.76190 -19.53815 -18.52030 -17.79070 -17.54708 -17.23783 -16.97568 -16.46227 -16.42978 -16.38491 -15.32200 -14.97211 -14.86596 -14.51018 -14.26609 -13.81935 -13.30268 -13.13961 -12.94538 -12.80674 -12.59363 -12.52463 -12.25006 -12.24041 -11.62854 -11.40016 -10.66299 -10.59793 -10.28264 -9.94955 -9.83844 -8.23508 -6.33034 -0.51019 -0.14435 0.96975 1.41497 1.43224 1.55620 1.69684 2.06445 2.43318 2.51869 2.99140 3.11761 3.47286 3.69069 3.78855 4.08693 4.30396 4.47846 4.50304 4.66073 4.79094 4.86515 5.00112 5.12214 5.24575 5.48409 5.57078 5.59961 5.79621 6.17268 6.54047 6.79955 7.17309 7.36197 8.88425 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.003713 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.996454 B = 7538.279977 C = 8264.829129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.142 3.858 11 N -0.707 5.707 12 C 0.540 3.460 13 O -0.558 6.558 14 C -0.118 4.118 15 C -0.079 4.079 16 C -0.075 4.075 17 C -0.102 4.102 18 C 0.084 3.916 19 F -0.132 7.132 20 C -0.052 4.052 21 Cl -0.042 7.042 22 H 0.266 0.734 23 H 0.012 0.988 24 H 0.012 0.988 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.411 0.589 28 H 0.164 0.836 29 H 0.193 0.807 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 -20.407 -0.004 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.015 4.015 10 C 0.018 3.982 11 N -0.358 5.358 12 C 0.327 3.673 13 O -0.438 6.438 14 C -0.122 4.122 15 C -0.098 4.098 16 C -0.092 4.092 17 C -0.121 4.121 18 C 0.064 3.936 19 F -0.111 7.111 20 C -0.081 4.081 21 Cl -0.013 7.013 22 H 0.075 0.925 23 H 0.031 0.969 24 H 0.030 0.970 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.248 0.752 28 H 0.182 0.818 29 H 0.210 0.790 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.325 -20.305 0.001 20.761 hybrid contribution 0.616 0.878 -0.002 1.072 sum -3.709 -19.427 -0.001 19.778 Atomic orbital electron populations 1.70041 1.07387 1.27913 1.51052 1.25806 0.95773 1.02870 0.94449 0.85443 0.78952 0.79039 0.77898 1.19191 1.20227 1.20238 1.21488 0.93554 0.91996 1.51443 0.92495 1.19142 0.94207 0.91462 0.96661 1.21269 0.95114 0.81739 1.00030 1.45997 1.11116 1.05189 1.73545 1.18503 0.87259 0.84392 0.77098 1.90834 1.14573 1.87812 1.50560 1.19652 0.95157 0.90884 1.06474 1.21808 0.90435 1.01817 0.95720 1.21596 1.03031 0.89256 0.95344 1.21815 0.89662 1.02634 0.97992 1.17561 0.91314 0.79166 1.05563 1.91535 1.80948 1.44612 1.93977 1.21305 0.86681 0.93920 1.06166 1.98416 1.07859 1.98714 1.96309 0.92527 0.96937 0.96950 0.93376 0.93385 0.75169 0.81846 0.79010 0.79722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.91 13.29 21.45 0.28 -52.62 16 2 C 0.01 0.55 5.46 84.66 0.46 1.01 16 3 Si 0.96 43.11 29.54 68.60 2.03 45.13 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -30.02 9.11 25.60 0.23 -29.79 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.02 1.11 5.09 29.85 0.15 1.26 16 10 C 0.14 5.97 5.61 86.38 0.48 6.45 16 11 N -0.71 -23.71 5.51 -466.03 -2.57 -26.28 16 12 C 0.54 18.56 7.77 86.77 0.67 19.23 16 13 O -0.56 -23.35 13.97 -3.89 -0.05 -23.40 16 14 C -0.12 -3.08 5.88 -20.08 -0.12 -3.19 16 15 C -0.08 -1.30 9.54 22.53 0.21 -1.09 16 16 C -0.07 -0.74 10.03 22.23 0.22 -0.52 16 17 C -0.10 -1.23 10.02 22.36 0.22 -1.01 16 18 C 0.08 1.75 7.27 22.36 0.16 1.91 16 19 F -0.13 -2.96 16.83 44.97 0.76 -2.20 16 20 C -0.05 -1.40 6.36 22.64 0.14 -1.26 16 21 Cl -0.04 -1.35 25.68 -2.72 -0.07 -1.42 16 22 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 23 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.41 11.10 6.50 -92.71 -0.60 10.50 16 28 H 0.16 2.05 6.40 -2.91 -0.02 2.03 16 29 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 30 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -69.71 285.89 3.82 -65.90 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: 0.58 Total: 1.89 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 2.86 Total: -6.99 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -2.28 Total: -78.90 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.05 Total: -23.40 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.76 Total: -2.20 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.42 kcal Total: -69.71 3.82 -65.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165231344.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.997 kcal (2) G-P(sol) polarization free energy of solvation -69.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds