Wall clock time and date at job start Mon Mar 30 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99873 * 2 1 4 4 H 1.48503 * 109.46883 * 239.99617 * 3 2 1 5 5 H 1.48493 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47080 * 120.00140 * 3 2 1 7 7 C 1.37880 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46782 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46911 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00156 * 179.97438 * 11 10 9 13 13 O 1.21559 * 119.99964 * 359.97438 * 12 11 10 14 14 C 1.47783 * 120.00203 * 179.97438 * 12 11 10 15 15 C 1.39628 * 120.11849 * 359.97438 * 14 12 11 16 16 C 1.37892 * 119.91349 * 179.97438 * 15 14 12 17 17 C 1.38480 * 120.16201 * 0.02632 * 16 15 14 18 18 Cl 1.73608 * 119.87770 * 180.26969 * 17 16 15 19 19 C 1.38695 * 120.24372 * 359.97438 * 17 16 15 20 20 F 1.35101 * 119.95790 * 179.97438 * 19 17 16 21 21 C 1.38132 * 120.08055 * 359.97438 * 19 17 16 22 22 H 0.96999 * 120.00200 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.46632 * 60.00278 * 9 7 2 24 24 H 1.09005 * 109.47012 * 300.00215 * 9 7 2 25 25 H 1.08996 * 109.47190 * 60.00186 * 10 9 7 26 26 H 1.08997 * 109.47367 * 299.99986 * 10 9 7 27 27 H 0.97006 * 119.99772 * 359.97438 * 11 10 9 28 28 H 1.07995 * 120.04325 * 0.02562 * 15 14 12 29 29 H 1.08001 * 119.92100 * 180.02562 * 16 15 14 30 30 H 1.08001 * 120.07844 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0018 13 8 3.4023 -6.0980 -0.0023 14 6 1.4478 -7.3779 -0.0018 15 6 0.0515 -7.3808 -0.0007 16 6 -0.6336 -8.5774 -0.0013 17 6 0.0597 -9.7762 -0.0024 18 17 -0.8104 -11.2785 -0.0103 19 6 1.4466 -9.7810 -0.0036 20 9 2.1172 -10.9539 -0.0042 21 6 2.1431 -8.5881 -0.0041 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8719 -3.6043 0.8894 26 1 2.8720 -3.6043 -0.8905 27 1 0.5427 -4.9308 -0.0011 28 1 -0.4911 -6.4471 -0.0002 29 1 -1.7137 -8.5798 -0.0008 30 1 3.2231 -8.5919 -0.0045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230074646.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:50 Heat of formation + Delta-G solvation = -93.038076 kcal Electronic energy + Delta-G solvation = -17199.060821 eV Core-core repulsion = 13933.449327 eV Total energy + Delta-G solvation = -3265.611494 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.13667 -41.33367 -39.46966 -37.64541 -36.68806 -34.88746 -32.60439 -32.09712 -30.94135 -27.03977 -25.05772 -24.05658 -22.88944 -21.75671 -19.57024 -18.54851 -17.90607 -17.67547 -17.29280 -17.00128 -16.54678 -16.48442 -16.44383 -15.13519 -14.94354 -14.94155 -14.60880 -14.27901 -14.08358 -13.55527 -13.20871 -12.94176 -12.93802 -12.62323 -12.54023 -12.22177 -12.06983 -11.70245 -11.47736 -11.08369 -10.58661 -10.27886 -10.13593 -9.87205 -8.22671 -6.32402 -0.66454 -0.11052 0.79549 1.43940 1.45263 1.53161 1.53200 2.03353 2.43728 2.46960 2.88245 3.12649 3.45226 3.52252 3.80803 3.89986 4.29292 4.43958 4.50231 4.62669 4.76732 4.81246 4.87106 4.97556 5.20363 5.39885 5.48673 5.60478 5.79754 6.17401 6.49693 6.80418 7.10829 7.36800 8.88744 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.045376 B = 0.003108 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.924728 B = 9006.799964 C = 9603.275726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.704 5.704 12 C 0.550 3.450 13 O -0.580 6.580 14 C -0.106 4.106 15 C -0.071 4.071 16 C -0.074 4.074 17 C -0.055 4.055 18 Cl -0.038 7.038 19 C 0.093 3.907 20 F -0.130 7.130 21 C -0.092 4.092 22 H 0.266 0.734 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.413 0.587 28 H 0.170 0.830 29 H 0.185 0.815 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.747 -19.864 -0.005 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.355 5.355 12 C 0.338 3.662 13 O -0.461 6.461 14 C -0.109 4.109 15 C -0.090 4.090 16 C -0.093 4.093 17 C -0.083 4.083 18 Cl -0.009 7.009 19 C 0.073 3.927 20 F -0.108 7.108 21 C -0.112 4.112 22 H 0.075 0.925 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.251 0.749 28 H 0.188 0.812 29 H 0.202 0.798 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.100 -19.894 -0.006 20.312 hybrid contribution 0.205 0.591 0.000 0.626 sum -3.895 -19.302 -0.006 19.691 Atomic orbital electron populations 1.70029 1.07407 1.28040 1.50920 1.25810 0.95765 1.02889 0.94469 0.85556 0.78358 0.78434 0.79063 1.19459 1.20679 1.19450 1.21445 0.93620 0.91984 1.51623 0.92333 1.19147 0.94229 0.91444 0.96728 1.21325 0.95175 0.81675 1.00298 1.46024 1.11324 1.05318 1.72844 1.18495 0.86942 0.84418 0.76350 1.90757 1.15175 1.88138 1.52034 1.19758 0.94669 0.91908 1.04574 1.21695 0.91629 1.00248 0.95413 1.21281 1.02669 0.88108 0.97199 1.21411 0.90349 0.90423 1.06087 1.98410 1.75319 1.30602 1.96576 1.17234 0.88631 0.81631 1.05217 1.91544 1.80324 1.45037 1.93911 1.21154 1.01942 0.89477 0.98609 0.92537 0.96897 0.96909 0.93093 0.93103 0.74915 0.81240 0.79774 0.83317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.47 13.29 21.45 0.28 -52.18 16 2 C 0.01 0.53 5.46 84.66 0.46 0.99 16 3 Si 0.96 42.50 29.54 68.60 2.03 44.53 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -29.55 9.11 25.60 0.23 -29.32 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.02 1.04 5.09 29.85 0.15 1.20 16 10 C 0.14 5.59 5.61 86.38 0.48 6.07 16 11 N -0.70 -22.24 5.51 -466.04 -2.57 -24.81 16 12 C 0.55 17.48 7.77 86.77 0.67 18.16 16 13 O -0.58 -23.10 16.34 -3.90 -0.06 -23.16 16 14 C -0.11 -2.49 5.87 -20.09 -0.12 -2.61 16 15 C -0.07 -1.16 9.54 22.52 0.21 -0.94 16 16 C -0.07 -1.01 9.81 22.25 0.22 -0.79 16 17 C -0.05 -0.96 6.33 22.44 0.14 -0.82 16 18 Cl -0.04 -0.62 28.60 -2.72 -0.08 -0.70 16 19 C 0.09 1.97 7.27 22.35 0.16 2.13 16 20 F -0.13 -2.93 16.83 44.97 0.76 -2.18 16 21 C -0.09 -2.15 9.57 22.57 0.22 -1.94 16 22 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 23 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.41 10.40 6.50 -92.70 -0.60 9.80 16 28 H 0.17 1.98 6.40 -2.91 -0.02 1.96 16 29 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.15 3.70 7.65 -2.91 -0.02 3.68 16 Total: -1.00 -64.60 290.08 3.78 -60.82 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.58 Total: 5.55 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 2.84 Total: -7.87 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -2.28 Total: -76.99 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.06 Total: -23.16 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.76 Total: -2.18 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -64.60 3.78 -60.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230074646.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.221 kcal (2) G-P(sol) polarization free energy of solvation -64.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds