Wall clock time and date at job start Mon Mar 30 2020 01:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47202 * 2 1 4 4 C 1.50693 * 109.47477 * 239.99771 * 2 1 3 5 5 H 1.08005 * 119.99798 * 245.45955 * 4 2 1 6 6 C 1.37872 * 120.00402 * 65.45433 * 4 2 1 7 7 N 1.31522 * 119.99608 * 9.62176 * 6 4 2 8 8 Si 1.86797 * 120.00673 * 189.62090 * 6 4 2 9 9 H 1.48493 * 109.47335 * 84.99039 * 8 6 4 10 10 H 1.48498 * 109.47450 * 204.99913 * 8 6 4 11 11 H 1.48503 * 109.47019 * 324.99464 * 8 6 4 12 12 N 1.46499 * 109.46934 * 119.99505 * 2 1 3 13 13 C 1.46504 * 120.00074 * 60.00569 * 12 2 1 14 14 C 1.37943 * 120.00330 * 240.00140 * 12 2 1 15 15 N 1.30133 * 124.71521 * 0.26399 * 14 12 2 16 16 C 1.31115 * 117.24935 * 180.26768 * 15 14 12 17 17 Cl 1.73594 * 123.02209 * 179.75434 * 16 15 14 18 18 C 1.36834 * 113.95159 * 359.48523 * 16 15 14 19 19 C 1.43200 * 126.11006 * 180.25365 * 18 16 15 20 20 N 7.41065 * 123.94664 * 77.94876 * 2 1 3 21 21 S 1.70908 * 124.72159 * 180.02562 * 14 12 2 22 22 H 1.08998 * 109.47391 * 63.29272 * 1 2 3 23 23 H 1.09001 * 109.47322 * 183.28827 * 1 2 3 24 24 H 1.08994 * 109.47657 * 303.28853 * 1 2 3 25 25 H 0.97006 * 119.99613 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.46718 * 269.99531 * 13 12 2 27 27 H 1.09003 * 109.47178 * 29.99562 * 13 12 2 28 28 H 1.08998 * 109.47102 * 149.99770 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.5786 -1.6371 -1.1336 6 6 1.7946 -0.1776 -2.4795 7 7 1.3003 1.0359 -2.5936 8 14 2.1744 -1.1789 -4.0100 9 1 1.0217 -2.0610 -4.3232 10 1 2.4216 -0.2628 -5.1523 11 1 3.3823 -2.0092 -3.7711 12 7 2.0182 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.8113 -0.0201 2.1043 15 7 3.1767 1.2239 1.9926 16 6 3.9382 1.7133 2.9411 17 17 4.5170 3.3499 2.9395 18 6 4.2307 0.8198 3.9352 19 6 5.0322 1.0784 5.0934 20 7 5.6682 1.2835 6.0121 21 16 3.4458 -0.7060 3.5353 22 1 -0.3634 0.4619 -0.9180 23 1 -0.3634 -1.0260 0.0589 24 1 -0.3634 0.5640 0.8590 25 1 1.1333 1.4109 -3.4725 26 1 0.7375 -2.1443 1.9995 27 1 1.5295 -2.5969 0.4709 28 1 2.4628 -2.5817 1.9865 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278680055.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:32 Heat of formation + Delta-G solvation = 74.478537 kcal Electronic energy + Delta-G solvation = -15848.887812 eV Core-core repulsion = 13053.213215 eV Total energy + Delta-G solvation = -2795.674596 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 271.024 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.64234 -37.30338 -36.32943 -36.08502 -33.16203 -30.27599 -29.57408 -26.90292 -25.42169 -24.10515 -21.93208 -20.25144 -18.59042 -17.42357 -16.56331 -15.73583 -15.28452 -15.22579 -14.64994 -13.88084 -13.76796 -13.05128 -12.94295 -12.87931 -12.72127 -12.10543 -11.90741 -11.74896 -11.57946 -11.17640 -11.15049 -10.92946 -10.85125 -10.57214 -10.35536 -9.78950 -9.36549 -9.26097 -9.00284 -8.59892 -7.20264 -6.27460 -4.35444 0.62054 0.99884 1.33479 2.11764 2.75731 3.12626 3.16135 3.24446 3.24994 3.38827 3.51150 4.22714 4.27783 5.01591 5.04796 5.26636 5.57936 5.62825 5.96297 6.33877 6.51136 6.64427 6.85754 7.17318 7.44709 7.59300 7.67564 7.79303 7.90848 8.07401 8.66422 9.30197 10.78667 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.005645 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.153571 B = 4958.785335 C = 5516.536707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.259 3.741 3 H 0.082 0.918 4 C -0.540 4.540 5 H 0.063 0.937 6 C 0.073 3.927 7 N -0.878 5.878 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.521 5.521 13 C 0.080 3.920 14 C 0.365 3.635 15 N -0.548 5.548 16 C 0.269 3.731 17 Cl 0.000 7.000 18 C -0.282 4.282 19 C 0.310 3.690 20 N -0.433 5.433 21 S 0.155 5.845 22 H 0.082 0.918 23 H 0.035 0.965 24 H 0.020 0.980 25 H 0.267 0.733 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 -3.864 8.027 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.159 3.841 3 H 0.100 0.900 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.132 4.132 7 N -0.514 5.514 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.230 5.230 13 C -0.063 4.063 14 C -0.005 4.005 15 N -0.275 5.275 16 C 0.096 3.904 17 Cl 0.028 6.972 18 C -0.412 4.412 19 C -0.004 4.004 20 N -0.112 5.112 21 S 0.403 5.597 22 H 0.101 0.899 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.765 -4.179 9.053 10.000 hybrid contribution 0.254 0.525 -1.455 1.567 sum 1.019 -3.654 7.598 8.492 Atomic orbital electron populations 1.22069 0.97732 0.99328 1.01073 1.19394 0.90912 0.95281 0.78554 0.90038 1.21180 1.37733 1.08984 0.89970 0.91910 1.24869 0.94755 0.94599 0.98980 1.69959 1.43397 1.13529 1.24558 0.86516 0.78794 0.79983 0.82208 1.20338 1.21037 1.19863 1.47301 1.44621 1.10627 1.20421 1.21934 0.99847 0.80557 1.03984 1.23506 0.93450 0.90506 0.93069 1.65634 1.21797 1.10919 1.29107 1.20527 0.92821 0.88454 0.88643 1.98406 1.85555 1.15339 1.97870 1.20264 1.20963 0.98835 1.01118 1.23745 0.91725 0.93806 0.91140 1.81221 1.11740 1.07272 1.10983 1.83659 1.47893 1.10509 1.17611 0.89927 0.94599 0.96093 0.92324 0.91987 0.88060 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.12 37.16 0.34 -2.60 15 2 C 0.26 5.74 2.56 -69.09 -0.18 5.56 15 3 H 0.08 2.10 7.03 -51.93 -0.37 1.74 15 4 C -0.54 -13.02 8.01 -34.45 -0.28 -13.29 15 5 H 0.06 1.48 7.16 -52.48 -0.38 1.10 15 6 C 0.07 1.82 5.17 -17.82 -0.09 1.72 15 7 N -0.88 -23.12 12.17 55.43 0.67 -22.45 15 8 Si 0.90 19.47 29.55 -169.99 -5.02 14.45 15 9 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 11 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 12 N -0.52 -9.45 2.84 -177.72 -0.50 -9.95 15 13 C 0.08 1.09 9.31 59.85 0.56 1.65 15 14 C 0.37 6.43 7.72 -87.96 -0.68 5.75 15 15 N -0.55 -10.63 9.45 -11.82 -0.11 -10.74 15 16 C 0.27 4.64 7.41 -18.37 -0.14 4.50 15 17 Cl 0.00 0.00 28.82 -51.86 -1.49 -1.50 15 18 C -0.28 -4.42 6.39 -38.17 -0.24 -4.66 15 19 C 0.31 4.91 15.43 -22.47 -0.35 4.57 15 20 N -0.43 -7.25 18.54 41.84 0.78 -6.48 15 21 S 0.16 2.15 21.60 -107.50 -2.32 -0.17 15 22 H 0.08 1.89 6.84 -51.93 -0.36 1.54 15 23 H 0.03 0.66 7.56 -51.93 -0.39 0.26 15 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 25 H 0.27 6.73 8.31 -40.82 -0.34 6.39 15 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.10 1.44 6.92 -51.93 -0.36 1.08 15 28 H 0.06 0.69 7.01 -51.93 -0.36 0.32 15 LS Contribution 282.52 15.07 4.26 4.26 Total: -1.00 -26.56 282.52 -7.00 -33.56 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: -2.19 Total: -4.17 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.05 Total: 3.20 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.83 Total: -49.62 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.32 Total: -0.17 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.49 Total: -1.50 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.56 -7.00 -33.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278680055.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.035 kcal (2) G-P(sol) polarization free energy of solvation -26.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds