Wall clock time and date at job start Mon Mar 30 2020 00:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00148 * 2 1 4 4 H 1.48501 * 109.47111 * 270.00533 * 3 2 1 5 5 H 1.48506 * 109.47216 * 30.00162 * 3 2 1 6 6 H 1.48496 * 109.47242 * 150.00616 * 3 2 1 7 7 C 1.38816 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99816 * 164.39895 * 7 2 1 9 9 N 1.36935 * 119.99953 * 344.38871 * 7 2 1 10 10 C 1.47090 * 120.97222 * 155.80380 * 9 7 2 11 11 C 1.53282 * 109.15493 * 116.30225 * 10 9 7 12 12 N 1.46432 * 109.23324 * 45.77873 * 11 10 9 13 13 C 1.36423 * 127.55230 * 161.69231 * 12 11 10 14 14 Br 1.89100 * 126.63470 * 359.51494 * 13 12 11 15 15 C 1.35330 * 106.69647 * 179.68827 * 13 12 11 16 16 N 1.34332 * 108.03533 * 359.94371 * 15 13 12 17 17 C 1.29971 * 109.17210 * 0.28570 * 16 15 13 18 18 C 1.47454 * 120.97827 * 335.77636 * 9 7 2 19 19 H 0.96997 * 120.00204 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.51728 * 236.20297 * 10 9 7 21 21 H 1.08998 * 109.52483 * 356.39437 * 10 9 7 22 22 H 1.08996 * 109.50691 * 165.70523 * 11 10 9 23 23 H 1.08996 * 109.50853 * 285.79932 * 11 10 9 24 24 H 1.07995 * 125.99414 * 180.09612 * 15 13 12 25 25 H 1.08991 * 109.94317 * 342.62002 * 18 9 7 26 26 H 1.08998 * 109.93476 * 103.76914 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0604 -1.2193 -0.2521 9 7 1.3634 -2.3663 0.3181 10 6 1.8632 -3.6650 -0.1587 11 6 2.2779 -4.5173 1.0459 12 7 1.2354 -4.4426 2.0715 13 6 1.0382 -5.2927 3.1201 14 35 2.0614 -6.8276 3.5362 15 6 -0.0338 -4.8267 3.8021 16 7 -0.4731 -3.7199 3.1805 17 6 0.2755 -3.4869 2.1439 18 6 0.1458 -2.3549 1.1497 19 1 -0.4850 0.8400 0.0004 20 1 1.0766 -4.1765 -0.7134 21 1 2.7247 -3.5077 -0.8077 22 1 2.4063 -5.5531 0.7319 23 1 3.2168 -4.1410 1.4520 24 1 -0.4599 -5.2660 4.6919 25 1 0.0646 -1.4045 1.6769 26 1 -0.7332 -2.5088 0.5237 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279403185.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:23 Heat of formation + Delta-G solvation = 73.884806 kcal Electronic energy + Delta-G solvation = -13661.256745 eV Core-core repulsion = 11208.375845 eV Total energy + Delta-G solvation = -2452.880899 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.002 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.21503 -38.05908 -35.32365 -33.55824 -32.44859 -30.87632 -29.71675 -27.25027 -25.29970 -23.41428 -22.25904 -20.26231 -18.61458 -18.13724 -17.15289 -16.62061 -15.66782 -15.50201 -15.09161 -14.93077 -14.54561 -14.04651 -13.35548 -13.20892 -12.82568 -12.72021 -12.38806 -12.19174 -12.07228 -11.88959 -11.77339 -10.99234 -10.73712 -10.62072 -9.24845 -8.99169 -7.98746 -5.44021 0.18156 0.78696 1.48029 1.51399 1.59492 1.86763 1.98366 2.45445 3.13003 3.33609 3.62834 3.76828 4.07136 4.16458 4.24693 4.46701 4.73401 4.85649 5.02145 5.07597 5.34410 5.57001 5.58944 6.02048 6.19374 6.88334 7.03773 7.63775 8.15125 9.11859 Molecular weight = 271.00amu Principal moments of inertia in cm(-1) A = 0.044177 B = 0.005842 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.659212 B = 4791.718196 C = 5062.486739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.044 4.044 3 Si 0.972 3.028 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.271 4.271 8 H 0.084 0.916 9 N -0.611 5.611 10 C 0.128 3.872 11 C 0.084 3.916 12 N -0.433 5.433 13 C -0.055 4.055 14 Br 0.041 6.959 15 C 0.004 3.996 16 N -0.520 5.520 17 C 0.213 3.787 18 C 0.269 3.731 19 H 0.255 0.745 20 H 0.040 0.960 21 H 0.103 0.897 22 H 0.115 0.885 23 H 0.088 0.912 24 H 0.202 0.798 25 H 0.078 0.922 26 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.960 -14.554 5.204 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.400 4.400 8 H 0.102 0.898 9 N -0.334 5.334 10 C 0.002 3.998 11 C -0.039 4.039 12 N -0.116 5.116 13 C -0.248 4.248 14 Br 0.123 6.877 15 C -0.149 4.149 16 N -0.240 5.240 17 C -0.053 4.053 18 C 0.141 3.859 19 H 0.064 0.936 20 H 0.058 0.942 21 H 0.122 0.878 22 H 0.133 0.867 23 H 0.106 0.894 24 H 0.219 0.781 25 H 0.096 0.904 26 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.734 -14.502 5.429 16.512 hybrid contribution 0.480 0.844 -0.299 1.016 sum 6.214 -13.658 5.129 15.858 Atomic orbital electron populations 1.70101 1.06692 1.26547 1.54600 1.25818 0.96105 1.01683 1.00362 0.85217 0.77932 0.79177 0.77726 1.20639 1.22173 1.19518 1.19517 0.93039 0.84779 1.42684 0.89830 1.44358 1.29387 1.02797 1.56884 1.21411 0.99850 0.85456 0.93052 1.22843 0.89198 1.03375 0.88482 1.45439 1.24687 1.19948 1.21504 1.23251 1.04921 0.98843 0.97806 1.96646 1.69752 1.28648 1.92616 1.22915 0.95400 0.94325 1.02237 1.70150 1.28777 1.17383 1.07703 1.24804 0.88234 0.94512 0.97742 1.19122 0.89040 0.90720 0.87045 0.93561 0.94181 0.87845 0.86662 0.89382 0.78124 0.90397 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.28 11.08 21.65 0.24 -53.04 15 2 C -0.04 -2.32 5.00 84.86 0.42 -1.89 15 3 Si 0.97 43.07 29.58 68.60 2.03 45.09 15 4 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 5 H -0.30 -13.38 7.11 99.48 0.71 -12.67 15 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 7 C -0.27 -13.92 9.66 84.03 0.81 -13.11 15 8 H 0.08 4.04 7.88 -2.91 -0.02 4.01 15 9 N -0.61 -29.07 3.01 -700.89 -2.11 -31.18 15 10 C 0.13 4.65 6.50 86.36 0.56 5.21 15 11 C 0.08 2.61 6.96 86.49 0.60 3.21 15 12 N -0.43 -16.01 3.14 -507.09 -1.59 -17.61 15 13 C -0.06 -1.80 7.42 83.31 0.62 -1.18 15 14 Br 0.04 0.96 33.90 -20.37 -0.69 0.27 15 15 C 0.00 0.13 11.87 83.64 0.99 1.12 15 16 N -0.52 -22.46 11.24 -186.87 -2.10 -24.56 15 17 C 0.21 9.40 7.78 138.25 1.08 10.47 15 18 C 0.27 13.37 5.37 85.61 0.46 13.83 15 19 H 0.26 14.16 8.31 -92.71 -0.77 13.39 15 20 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.10 3.32 7.94 -2.39 -0.02 3.30 15 22 H 0.12 2.78 8.14 -2.39 -0.02 2.76 15 23 H 0.09 2.65 8.14 -2.39 -0.02 2.63 15 24 H 0.20 5.47 8.06 -2.91 -0.02 5.44 15 25 H 0.08 4.39 6.45 -2.39 -0.02 4.38 15 26 H 0.04 2.00 8.14 -2.39 -0.02 1.98 15 Total: -1.00 -61.41 245.03 2.51 -58.89 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.19 Total: 4.47 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 5.55 Total: 17.65 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -5.56 Total: -126.39 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 35 Polarization: 0.96 SS G_CDS: -0.69 Total: 0.27 kcal Total: -61.41 2.51 -58.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279403185.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.779 kcal (2) G-P(sol) polarization free energy of solvation -61.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds