Wall clock time and date at job start Mon Mar 30 2020 01:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99942 * 2 1 4 4 H 1.48496 * 109.47409 * 270.00253 * 3 2 1 5 5 H 1.48504 * 109.46873 * 30.00081 * 3 2 1 6 6 H 1.48499 * 109.47255 * 149.99964 * 3 2 1 7 7 C 1.37869 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00305 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00161 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47081 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47081 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99614 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00262 * 179.97438 * 11 10 9 14 14 C 1.39968 * 120.00156 * 175.51462 * 13 11 10 15 15 C 1.38816 * 120.06116 * 34.68677 * 14 13 11 16 16 C 1.38329 * 119.91694 * 179.76797 * 15 14 13 17 17 F 1.35106 * 119.97986 * 180.23282 * 16 15 14 18 18 C 1.38514 * 120.04135 * 0.48467 * 16 15 14 19 19 C 1.38231 * 120.12381 * 359.76752 * 18 16 15 20 20 C 1.38224 * 120.08194 * 0.02562 * 19 18 16 21 21 Cl 1.73601 * 120.02187 * 179.97438 * 20 19 18 22 22 H 0.97000 * 120.00004 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47169 * 59.99463 * 9 7 2 24 24 H 1.09001 * 109.46639 * 299.99903 * 9 7 2 25 25 H 1.08996 * 109.47534 * 59.99714 * 10 9 7 26 26 H 1.09001 * 109.47327 * 299.99509 * 10 9 7 27 27 H 0.97002 * 119.99582 * 355.51766 * 13 11 10 28 28 H 1.08004 * 120.04305 * 359.97438 * 15 14 13 29 29 H 1.08006 * 119.93711 * 179.74628 * 18 16 15 30 30 H 1.08004 * 119.95540 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6364 -0.0001 11 6 5.5286 -2.6364 -0.0001 12 8 6.1349 -1.5860 -0.0005 13 7 6.2025 -3.8036 0.0003 14 6 7.5990 -3.8055 -0.0946 15 6 8.3377 -2.7923 0.5009 16 6 9.7180 -2.7997 0.4094 17 9 10.4385 -1.8167 0.9926 18 6 10.3615 -3.8113 -0.2841 19 6 9.6273 -4.8183 -0.8822 20 6 8.2481 -4.8182 -0.7903 21 17 7.3275 -6.0832 -1.5426 22 1 -0.4850 0.8400 0.0004 23 1 3.8745 -0.6807 0.8904 24 1 3.8752 -0.6795 -0.8895 25 1 3.6585 -3.1501 -0.8902 26 1 3.6579 -3.1505 0.8897 27 1 5.7197 -4.6423 0.0663 28 1 7.8357 -2.0010 1.0379 29 1 11.4391 -3.8132 -0.3579 30 1 10.1319 -5.6055 -1.4226 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291273308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:56 Heat of formation + Delta-G solvation = -90.975195 kcal Electronic energy + Delta-G solvation = -17645.038172 eV Core-core repulsion = 14379.516130 eV Total energy + Delta-G solvation = -3265.522041 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.03467 -41.72852 -39.66148 -37.49568 -35.99697 -35.57926 -33.44430 -31.66326 -30.78288 -28.05524 -24.81738 -23.84362 -22.84105 -21.38077 -19.53348 -19.16930 -18.11698 -17.73048 -17.34096 -16.95255 -16.70026 -16.50551 -16.23373 -15.30344 -14.93019 -14.80071 -14.69160 -14.45180 -14.18766 -13.61512 -13.45990 -12.95264 -12.85559 -12.45314 -12.16280 -12.06034 -12.00614 -11.78930 -11.59243 -11.41858 -10.90887 -10.78832 -9.90441 -9.35273 -8.32181 -6.35254 -0.22362 -0.01985 0.96427 1.32592 1.35171 1.43975 1.48805 1.83134 2.33811 2.35468 3.03918 3.10851 3.54811 3.72099 3.91456 4.05555 4.19232 4.33228 4.43312 4.66490 4.79440 4.92921 4.94879 5.02495 5.17790 5.33246 5.40757 5.59149 5.65729 6.17869 6.25189 6.71190 6.98364 7.30292 8.83440 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.023660 B = 0.004564 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.153428 B = 6132.983176 C = 7171.685039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.936 3.064 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.004 3.996 10 C -0.114 4.114 11 C 0.520 3.480 12 O -0.554 6.554 13 N -0.663 5.663 14 C 0.176 3.824 15 C -0.174 4.174 16 C 0.110 3.890 17 F -0.141 7.141 18 C -0.147 4.147 19 C -0.050 4.050 20 C -0.080 4.080 21 Cl -0.046 7.046 22 H 0.267 0.733 23 H 0.013 0.987 24 H 0.011 0.989 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.429 0.571 28 H 0.134 0.866 29 H 0.178 0.822 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.242 -14.353 -1.513 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.071 0.929 9 C -0.034 4.034 10 C -0.153 4.153 11 C 0.310 3.690 12 O -0.431 6.431 13 N -0.310 5.310 14 C 0.080 3.920 15 C -0.195 4.195 16 C 0.090 3.910 17 F -0.120 7.120 18 C -0.166 4.166 19 C -0.069 4.069 20 C -0.110 4.110 21 Cl -0.017 7.017 22 H 0.076 0.924 23 H 0.031 0.969 24 H 0.029 0.971 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.269 0.731 28 H 0.151 0.849 29 H 0.195 0.805 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 22.357 -13.558 -1.562 26.193 hybrid contribution -0.535 0.825 0.212 1.006 sum 21.822 -12.733 -1.350 25.301 Atomic orbital electron populations 1.70017 1.07787 1.28092 1.52453 1.25764 0.95433 1.02734 0.94284 0.85868 0.79296 0.79689 0.79094 1.19473 1.20483 1.18478 1.21402 0.91127 0.93789 1.50355 0.92920 1.19250 0.94105 0.93426 0.96661 1.21546 0.87431 1.00493 1.05879 1.21547 0.91544 0.82573 0.73323 1.90665 1.70847 1.32799 1.48759 1.43598 1.04091 1.10676 1.72653 1.17304 0.83732 0.95010 0.96004 1.21163 0.93004 1.01492 1.03856 1.17758 0.88528 0.87921 0.96808 1.91506 1.77513 1.60658 1.82287 1.21402 1.02860 0.93258 0.99088 1.21129 0.89843 0.98759 0.97146 1.20913 0.93577 0.94200 1.02273 1.98386 1.73762 1.49387 1.80191 0.92374 0.96860 0.97105 0.87176 0.87016 0.73106 0.84852 0.80455 0.79931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.46 13.96 21.44 0.30 -58.16 16 2 C 0.02 0.92 5.47 84.65 0.46 1.38 16 3 Si 0.94 46.18 27.47 68.60 1.88 48.06 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.26 -12.72 6.54 99.48 0.65 -12.06 16 7 C -0.53 -29.78 9.66 25.60 0.25 -29.54 16 8 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 9 C 0.00 0.17 3.33 29.85 0.10 0.27 16 10 C -0.11 -4.04 5.64 29.85 0.17 -3.88 16 11 C 0.52 17.51 7.68 87.66 0.67 18.18 16 12 O -0.55 -22.99 13.40 -3.05 -0.04 -23.03 16 13 N -0.66 -16.80 5.04 -303.44 -1.53 -18.33 16 14 C 0.18 4.36 6.30 38.15 0.24 4.60 16 15 C -0.17 -4.82 8.68 22.43 0.19 -4.63 16 16 C 0.11 2.53 7.30 22.36 0.16 2.69 16 17 F -0.14 -3.54 17.27 44.97 0.78 -2.77 16 18 C -0.15 -2.21 10.02 22.33 0.22 -1.99 16 19 C -0.05 -0.68 9.82 22.26 0.22 -0.46 16 20 C -0.08 -1.51 6.34 22.44 0.14 -1.36 16 21 Cl -0.05 -0.77 27.96 -2.72 -0.08 -0.84 16 22 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 23 H 0.01 0.66 7.16 -2.39 -0.02 0.64 16 24 H 0.01 0.53 7.52 -2.39 -0.02 0.51 16 25 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 26 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 27 H 0.43 8.24 8.08 -92.71 -0.75 7.49 16 28 H 0.13 4.48 6.20 -2.91 -0.02 4.46 16 29 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -70.63 283.74 4.53 -66.10 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 0.38 Total: 3.70 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 2.83 Total: -14.73 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -1.23 Total: -76.49 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.04 Total: -23.03 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.88 Total: 48.06 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.84 kcal Total: -70.63 4.53 -66.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291273308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.874 kcal (2) G-P(sol) polarization free energy of solvation -70.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds