Wall clock time and date at job start Mon Mar 30 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99615 * 2 1 4 4 H 1.48501 * 109.46862 * 270.00173 * 3 2 1 5 5 H 1.48494 * 109.47048 * 30.00242 * 3 2 1 6 6 H 1.48495 * 109.46909 * 150.00137 * 3 2 1 7 7 C 1.37870 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00325 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99624 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47486 * 179.97438 * 10 9 7 12 12 O 1.21291 * 119.99546 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00225 * 179.97438 * 11 10 9 14 14 C 1.39968 * 120.00188 * 185.27755 * 13 11 10 15 15 C 1.38896 * 120.04661 * 213.28403 * 14 13 11 16 16 C 1.38106 * 119.99134 * 179.97438 * 15 14 13 17 17 C 1.38354 * 120.08087 * 0.02623 * 16 15 14 18 18 Cl 1.73602 * 119.95412 * 180.27272 * 17 16 15 19 19 C 1.38584 * 120.09291 * 359.97438 * 17 16 15 20 20 F 1.35102 * 119.99688 * 180.02562 * 19 17 16 21 21 C 1.38342 * 120.00898 * 359.97438 * 19 17 16 22 22 H 0.97002 * 120.00367 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47362 * 60.00657 * 9 7 2 24 24 H 1.08998 * 109.47577 * 300.00263 * 9 7 2 25 25 H 1.09004 * 109.47259 * 59.99961 * 10 9 7 26 26 H 1.08998 * 109.46987 * 300.00495 * 10 9 7 27 27 H 0.97003 * 119.99985 * 5.27937 * 13 11 10 28 28 H 1.08001 * 120.00217 * 0.03887 * 15 14 13 29 29 H 1.08001 * 119.95964 * 180.02562 * 16 15 14 30 30 H 1.08002 * 120.04091 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0023 11 6 5.5287 -2.6363 -0.0035 12 8 6.1350 -1.5858 -0.0030 13 7 6.2026 -3.8034 -0.0041 14 6 7.5979 -3.8059 0.1062 15 6 8.3451 -4.7808 -0.5423 16 6 9.7218 -4.7819 -0.4330 17 6 10.3583 -3.8132 0.3223 18 17 12.0895 -3.8135 0.4516 19 6 9.6162 -2.8389 0.9708 20 9 10.2398 -1.8935 1.7075 21 6 8.2370 -2.8336 0.8631 22 1 -0.4851 0.8400 0.0004 23 1 3.8752 -0.6803 0.8889 24 1 3.8746 -0.6798 -0.8911 25 1 3.6581 -3.1496 -0.8925 26 1 3.6587 -3.1508 0.8874 27 1 5.7207 -4.6417 -0.0811 28 1 7.8495 -5.5372 -1.1328 29 1 10.3023 -5.5399 -0.9379 30 1 7.6581 -2.0748 1.3686 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291832739.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:21 Heat of formation + Delta-G solvation = -70.076712 kcal Electronic energy + Delta-G solvation = -17494.055366 eV Core-core repulsion = 14229.439551 eV Total energy + Delta-G solvation = -3264.615815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.09527 -40.57880 -38.60493 -36.77855 -34.66956 -33.64888 -31.55696 -30.97589 -29.60709 -26.30175 -23.67999 -22.89412 -21.32619 -19.99246 -18.43013 -17.52695 -16.94670 -16.71059 -16.07770 -15.87580 -15.78055 -15.23349 -14.20426 -14.14806 -13.75934 -13.61686 -13.32997 -12.87763 -12.65572 -12.55351 -12.22946 -11.90278 -11.53353 -11.18440 -11.05656 -10.32571 -10.29523 -10.17270 -9.88531 -9.55823 -9.28562 -9.13327 -8.58289 -8.33871 -6.10131 -4.10079 0.66261 0.84562 1.79293 2.65443 2.93688 3.28533 3.32959 3.40261 3.49466 3.88888 4.38069 4.44230 4.68191 4.81304 5.04926 5.20248 5.25112 5.48557 5.59956 5.72737 5.81802 5.89163 5.94734 6.12494 6.50319 6.59514 7.22651 7.29561 7.31019 7.68650 8.19887 8.43418 8.91719 9.52246 11.02469 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.038675 B = 0.003646 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.805035 B = 7678.438206 C = 8254.458345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.120 4.120 11 C 0.509 3.491 12 O -0.513 6.513 13 N -0.683 5.683 14 C 0.196 3.804 15 C -0.152 4.152 16 C -0.061 4.061 17 C -0.100 4.100 18 Cl -0.058 7.058 19 C 0.134 3.866 20 F -0.124 7.124 21 C -0.153 4.153 22 H 0.264 0.736 23 H 0.025 0.975 24 H 0.021 0.979 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.416 0.584 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.830 -12.913 -0.081 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.092 0.908 9 C -0.038 4.038 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.386 6.386 13 N -0.329 5.329 14 C 0.099 3.901 15 C -0.173 4.173 16 C -0.080 4.080 17 C -0.128 4.128 18 Cl -0.029 7.029 19 C 0.113 3.887 20 F -0.103 7.103 21 C -0.174 4.174 22 H 0.074 0.926 23 H 0.043 0.957 24 H 0.039 0.961 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.253 0.747 28 H 0.160 0.840 29 H 0.163 0.837 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 20.172 -11.943 -0.026 23.443 hybrid contribution 0.369 0.632 0.044 0.733 sum 20.541 -11.311 0.019 23.450 Atomic orbital electron populations 1.69903 1.06305 1.27105 1.50664 1.24966 0.94715 0.99253 0.94201 0.86804 0.80587 0.83405 0.78806 1.20179 1.21338 1.18569 1.21055 0.89048 0.94650 1.51840 0.90834 1.19404 0.96711 0.89780 0.97863 1.21740 0.86372 1.03931 1.03969 1.21968 0.92109 0.82270 0.73678 1.90702 1.70471 1.31160 1.46257 1.44010 1.03970 1.11105 1.73775 1.17595 0.84236 0.94870 0.93360 1.20934 0.93056 1.01423 1.01895 1.20696 0.93899 0.96852 0.96571 1.20891 0.85583 1.00233 1.06142 1.98373 1.08918 1.98296 1.97285 1.17157 0.89990 0.87649 0.93925 1.91550 1.82388 1.62103 1.74224 1.21153 0.92098 1.02466 1.01711 0.92600 0.95676 0.96115 0.88994 0.88836 0.74726 0.83960 0.83664 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.53 -14.51 9.66 -34.44 -0.33 -14.84 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C 0.00 0.01 3.33 -27.88 -0.09 -0.08 16 10 C -0.12 -2.08 5.64 -27.88 -0.16 -2.23 16 11 C 0.51 8.22 7.57 -10.99 -0.08 8.13 16 12 O -0.51 -10.29 13.66 5.55 0.08 -10.22 16 13 N -0.68 -7.88 5.34 -9.86 -0.05 -7.94 16 14 C 0.20 2.31 6.28 -83.69 -0.53 1.79 16 15 C -0.15 -1.34 9.96 -39.39 -0.39 -1.73 16 16 C -0.06 -0.53 9.82 -39.59 -0.39 -0.92 16 17 C -0.10 -1.11 6.33 -39.41 -0.25 -1.36 16 18 Cl -0.06 -0.60 28.61 -51.86 -1.48 -2.08 16 19 C 0.13 1.75 7.27 -39.42 -0.29 1.46 16 20 F -0.12 -1.75 16.83 2.25 0.04 -1.71 16 21 C -0.15 -2.11 8.63 -39.33 -0.34 -2.45 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 24 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 25 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.42 3.20 8.82 -40.82 -0.36 2.84 16 28 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.16 2.48 6.41 -52.49 -0.34 2.15 16 LS Contribution 285.20 15.07 4.30 4.30 Total: -1.00 -32.63 285.20 -6.70 -39.33 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -2.74 Total: -2.17 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -2.95 Total: -10.31 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.72 Total: -34.49 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.36 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.48 Total: -2.08 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.63 -6.70 -39.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291832739.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.746 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds