Wall clock time and date at job start Mon Mar 30 2020 01:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00097 * 2 1 4 4 H 1.48501 * 109.47039 * 269.99432 * 3 2 1 5 5 H 1.48491 * 109.47518 * 29.99625 * 3 2 1 6 6 H 1.48499 * 109.46934 * 149.99972 * 3 2 1 7 7 C 1.37881 * 119.99383 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00315 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99423 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46642 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46642 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00264 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99725 * 179.97438 * 11 10 9 14 14 C 1.40039 * 119.99998 * 175.54345 * 13 11 10 15 15 C 1.38803 * 120.06826 * 34.64042 * 14 13 11 16 16 C 1.38255 * 119.93728 * 179.74450 * 15 14 13 17 17 Cl 1.73604 * 119.95443 * 180.23089 * 16 15 14 18 18 C 1.38393 * 120.08536 * 0.52647 * 16 15 14 19 19 C 1.38248 * 120.14530 * 359.72449 * 18 16 15 20 20 C 1.38310 * 120.05714 * 0.02562 * 19 18 16 21 21 F 1.35102 * 120.04095 * 179.97438 * 20 19 18 22 22 H 0.97000 * 120.00048 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47033 * 60.00153 * 9 7 2 24 24 H 1.09003 * 109.46706 * 299.99801 * 9 7 2 25 25 H 1.08997 * 109.47390 * 60.00238 * 10 9 7 26 26 H 1.08995 * 109.47450 * 299.99577 * 10 9 7 27 27 H 0.97005 * 120.00245 * 355.54690 * 13 11 10 28 28 H 1.07992 * 120.03143 * 359.97438 * 15 14 13 29 29 H 1.08004 * 119.92375 * 179.70255 * 18 16 15 30 30 H 1.08000 * 119.97190 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5284 -2.6367 0.0009 12 8 6.1349 -1.5864 0.0005 13 7 6.2022 -3.8040 0.0014 14 6 7.5995 -3.8059 -0.0929 15 6 8.3381 -2.7926 0.5022 16 6 9.7176 -2.8000 0.4120 17 17 10.6422 -1.5360 1.1613 18 6 10.3621 -3.8104 -0.2801 19 6 9.6297 -4.8186 -0.8787 20 6 8.2496 -4.8198 -0.7877 21 9 7.5340 -5.8050 -1.3732 22 1 -0.4850 0.8400 -0.0004 23 1 3.8744 -0.6802 0.8911 24 1 3.8751 -0.6805 -0.8889 25 1 3.6584 -3.1503 -0.8892 26 1 3.6577 -3.1507 0.8907 27 1 5.7194 -4.6428 0.0669 28 1 7.8358 -2.0011 1.0384 29 1 11.4397 -3.8110 -0.3531 30 1 10.1355 -5.6059 -1.4177 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291875399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:22 Heat of formation + Delta-G solvation = -90.640740 kcal Electronic energy + Delta-G solvation = -17644.961761 eV Core-core repulsion = 14379.454223 eV Total energy + Delta-G solvation = -3265.507538 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.03357 -41.62366 -39.67963 -37.54772 -35.96357 -35.57638 -33.44454 -31.64865 -30.77342 -28.04372 -24.83548 -23.82208 -22.82910 -21.36503 -19.51845 -19.08387 -18.31619 -17.99774 -17.39410 -16.78107 -16.54507 -16.32433 -16.23523 -15.34116 -14.95761 -14.78109 -14.63497 -14.39612 -14.21711 -13.59488 -13.45864 -12.96682 -12.90810 -12.52555 -12.16407 -12.07205 -12.00364 -11.78637 -11.50020 -11.42015 -10.89444 -10.78908 -9.89445 -9.33012 -8.32307 -6.35521 -0.22498 -0.01782 0.99982 1.32901 1.35376 1.44266 1.49154 1.86292 2.33959 2.35288 3.00584 3.03756 3.57350 3.73944 3.93876 4.03809 4.24703 4.33137 4.43243 4.59025 4.84074 4.93447 4.94571 5.07870 5.13953 5.32453 5.40792 5.58928 5.65897 6.18158 6.25430 6.70961 6.99493 7.29994 8.83358 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.004469 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.510774 B = 6264.192768 C = 7336.865066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.015 3.985 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.004 3.996 10 C -0.114 4.114 11 C 0.519 3.481 12 O -0.553 6.553 13 N -0.664 5.664 14 C 0.115 3.885 15 C -0.111 4.111 16 C -0.035 4.035 17 Cl -0.061 7.061 18 C -0.090 4.090 19 C -0.108 4.108 20 C 0.070 3.930 21 F -0.133 7.133 22 H 0.267 0.733 23 H 0.014 0.986 24 H 0.010 0.990 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.430 0.570 28 H 0.135 0.865 29 H 0.176 0.824 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.782 -12.236 -0.255 26.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.183 4.183 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.568 4.568 8 H 0.070 0.930 9 C -0.034 4.034 10 C -0.153 4.153 11 C 0.309 3.691 12 O -0.430 6.430 13 N -0.311 5.311 14 C 0.019 3.981 15 C -0.132 4.132 16 C -0.062 4.062 17 Cl -0.032 7.032 18 C -0.109 4.109 19 C -0.127 4.127 20 C 0.048 3.952 21 F -0.111 7.111 22 H 0.076 0.924 23 H 0.032 0.968 24 H 0.029 0.971 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.269 0.731 28 H 0.153 0.847 29 H 0.194 0.806 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 24.017 -11.288 -0.214 26.538 hybrid contribution -0.685 0.594 0.073 0.910 sum 23.331 -10.694 -0.141 25.666 Atomic orbital electron populations 1.70020 1.07817 1.28114 1.52426 1.25782 0.95448 1.02793 0.94249 0.85854 0.79330 0.79587 0.79106 1.19480 1.20474 1.18351 1.21409 0.91171 0.93771 1.50424 0.93018 1.19248 0.94056 0.93400 0.96696 1.21536 0.87493 1.00500 1.05777 1.21531 0.91504 0.82591 0.73438 1.90659 1.70788 1.32717 1.48838 1.43474 1.03986 1.10706 1.72974 1.17782 0.84081 0.96934 0.99302 1.21034 0.92586 0.99444 1.00182 1.20913 0.91161 0.93305 1.00830 1.98383 1.72737 1.51211 1.80852 1.21238 1.02399 0.91506 0.95723 1.21314 0.90042 1.00735 1.00617 1.17679 0.90790 0.88532 0.98181 1.91511 1.78351 1.59395 1.81854 0.92368 0.96751 0.97113 0.87350 0.87065 0.73079 0.84712 0.80632 0.79791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 2 C 0.02 0.89 5.47 84.66 0.46 1.35 16 3 Si 0.94 46.14 27.47 68.60 1.88 48.03 16 4 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.26 -12.60 6.54 99.48 0.65 -11.95 16 7 C -0.53 -29.93 9.66 25.60 0.25 -29.69 16 8 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 9 C 0.00 0.19 3.33 29.85 0.10 0.29 16 10 C -0.11 -4.05 5.64 29.85 0.17 -3.88 16 11 C 0.52 17.54 7.68 87.66 0.67 18.21 16 12 O -0.55 -22.81 13.40 -3.03 -0.04 -22.85 16 13 N -0.66 -17.05 5.23 -303.33 -1.59 -18.63 16 14 C 0.12 2.88 6.31 38.16 0.24 3.12 16 15 C -0.11 -2.99 8.48 22.41 0.19 -2.80 16 16 C -0.03 -0.74 6.32 22.31 0.14 -0.60 16 17 Cl -0.06 -1.28 28.95 -2.72 -0.08 -1.36 16 18 C -0.09 -1.30 9.82 22.31 0.22 -1.08 16 19 C -0.11 -1.50 10.02 22.29 0.22 -1.27 16 20 C 0.07 1.39 7.31 22.48 0.16 1.56 16 21 F -0.13 -2.64 16.96 44.97 0.76 -1.88 16 22 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 23 H 0.01 0.71 7.16 -2.39 -0.02 0.69 16 24 H 0.01 0.52 7.53 -2.39 -0.02 0.51 16 25 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 26 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 27 H 0.43 8.25 8.67 -92.70 -0.80 7.45 16 28 H 0.14 4.37 6.19 -2.91 -0.02 4.35 16 29 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 30 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -70.46 285.00 4.40 -66.06 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 0.33 Total: 3.70 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 2.83 Total: -14.79 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -1.29 Total: -76.91 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.04 Total: -22.85 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.76 Total: -1.88 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.88 Total: 48.03 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -70.46 4.40 -66.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291875399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.580 kcal (2) G-P(sol) polarization free energy of solvation -70.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds