Wall clock time and date at job start Mon Mar 30 2020 00:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86801 * 119.99758 * 2 1 4 4 H 1.48497 * 109.47017 * 239.99540 * 3 2 1 5 5 H 1.48503 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47273 * 119.99404 * 3 2 1 7 7 C 1.38810 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99783 * 180.02562 * 7 2 1 9 9 O 1.34850 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.34738 * 117.00208 * 180.02562 * 9 7 2 11 11 O 1.21514 * 119.99773 * 359.97438 * 10 9 7 12 12 C 1.47596 * 120.00385 * 179.97438 * 10 9 7 13 13 C 1.40111 * 120.57119 * 0.25391 * 12 10 9 14 14 C 1.38326 * 118.28901 * 180.30883 * 13 12 10 15 15 C 1.38371 * 119.34189 * 359.43601 * 14 13 12 16 16 N 1.31932 * 121.11852 * 0.30062 * 15 14 13 17 17 C 1.31770 * 121.87400 * 359.97438 * 16 15 14 18 18 Br 1.89105 * 119.74134 * 179.97438 * 17 16 15 19 19 H 0.97000 * 120.00059 * 0.02562 * 1 2 3 20 20 H 1.08001 * 120.85739 * 0.02562 * 13 12 10 21 21 H 1.08002 * 120.33176 * 179.71913 * 14 13 12 22 22 H 1.08003 * 119.44148 * 180.28231 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0083 -1.2021 0.0005 8 1 3.0882 -1.2021 0.0010 9 8 1.3340 -2.3700 0.0005 10 6 2.0679 -3.5000 0.0016 11 8 3.2814 -3.4364 0.0021 12 6 1.3979 -4.8151 0.0023 13 6 -0.0005 -4.9025 -0.0036 14 6 -0.5788 -6.1590 0.0039 15 6 0.2333 -7.2793 0.0048 16 7 1.5480 -7.1684 0.0047 17 6 2.1473 -5.9948 0.0032 18 35 4.0362 -5.9060 0.0038 19 1 -0.4850 0.8400 -0.0004 20 1 -0.6111 -4.0117 -0.0091 21 1 -1.6537 -6.2647 0.0042 22 1 -0.2165 -8.2612 0.0060 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306342041.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:55 Heat of formation + Delta-G solvation = -26.536097 kcal Electronic energy + Delta-G solvation = -12903.867721 eV Core-core repulsion = 10278.506399 eV Total energy + Delta-G solvation = -2625.361322 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 270.963 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.13018 -38.62740 -35.27702 -32.74196 -32.19574 -31.94076 -29.47739 -25.84019 -24.11557 -22.92796 -20.64181 -17.83922 -17.37295 -16.53783 -15.92726 -15.07554 -14.86149 -14.37736 -14.01070 -13.73804 -13.00837 -12.71890 -11.91242 -11.70159 -11.31565 -10.73608 -10.58104 -10.47510 -10.31562 -9.95555 -9.65670 -9.61913 -8.77208 -8.65679 -8.29491 -6.56279 -4.16436 0.75388 1.24535 1.75014 3.08776 3.12936 3.16778 3.38041 3.78415 4.10150 4.30370 4.66298 4.96715 5.05155 5.07696 5.26404 5.39860 6.08855 6.15985 6.52219 6.71575 7.27440 7.76836 7.82269 8.60648 8.92426 9.71196 10.60986 Molecular weight = 270.96amu Principal moments of inertia in cm(-1) A = 0.028259 B = 0.007291 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.599678 B = 3839.342808 C = 4820.099436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.368 4.368 8 H 0.101 0.899 9 O -0.203 6.203 10 C 0.421 3.579 11 O -0.520 6.520 12 C -0.108 4.108 13 C -0.028 4.028 14 C -0.171 4.171 15 C 0.108 3.892 16 N -0.470 5.470 17 C 0.156 3.844 18 Br 0.025 6.975 19 H 0.273 0.727 20 H 0.160 0.840 21 H 0.144 0.856 22 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 -11.009 -0.001 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.444 4.444 8 H 0.118 0.882 9 O -0.111 6.111 10 C 0.267 3.733 11 O -0.417 6.417 12 C -0.114 4.114 13 C -0.055 4.055 14 C -0.191 4.191 15 C -0.051 4.051 16 N -0.180 5.180 17 C -0.062 4.062 18 Br 0.110 6.890 19 H 0.083 0.917 20 H 0.177 0.823 21 H 0.162 0.838 22 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.232 -11.526 0.001 11.592 hybrid contribution -0.702 1.440 -0.001 1.602 sum 0.530 -10.086 0.000 10.100 Atomic orbital electron populations 1.69957 1.06128 1.28229 1.45003 1.25409 0.95884 0.99038 0.96074 0.85677 0.78663 0.78968 0.79564 1.19291 1.20273 1.19286 1.21327 0.92721 0.79515 1.50811 0.88184 1.83855 1.39347 1.13191 1.74671 1.20298 0.86189 0.85028 0.81740 1.90814 1.13898 1.87007 1.49996 1.20144 0.94238 0.92995 1.04010 1.22120 0.93357 0.99226 0.90766 1.22217 1.01913 0.92986 1.02018 1.22890 0.88242 0.99312 0.94616 1.67518 1.12180 1.25405 1.12902 1.22951 0.94259 0.89486 0.99485 1.96786 0.97130 1.98469 1.96642 0.91729 0.82252 0.83790 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.94 13.67 55.49 0.76 -23.18 14 2 C 0.04 1.11 5.50 -17.52 -0.10 1.01 14 3 Si 0.95 20.58 29.55 -169.99 -5.02 15.55 14 4 H -0.27 -5.72 7.11 56.52 0.40 -5.31 14 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 14 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 14 7 C -0.37 -10.50 9.65 30.94 0.30 -10.20 14 8 H 0.10 2.86 6.86 -52.49 -0.36 2.50 14 9 O -0.20 -5.64 9.07 -21.64 -0.20 -5.83 14 10 C 0.42 10.50 7.83 34.55 0.27 10.77 14 11 O -0.52 -13.60 12.75 -19.28 -0.25 -13.85 14 12 C -0.11 -2.22 5.89 -104.81 -0.62 -2.84 14 13 C -0.03 -0.48 9.74 -38.85 -0.38 -0.86 14 14 C -0.17 -2.22 10.09 -39.50 -0.40 -2.62 14 15 C 0.11 1.42 11.17 -17.46 -0.20 1.23 14 16 N -0.47 -7.90 10.31 -11.27 -0.12 -8.01 14 17 C 0.16 3.00 7.21 -17.01 -0.12 2.88 14 18 Br 0.02 0.47 30.59 -68.01 -2.08 -1.61 14 19 H 0.27 6.99 8.31 -40.82 -0.34 6.65 14 20 H 0.16 2.76 7.70 -52.49 -0.40 2.35 14 21 H 0.14 1.31 8.06 -52.49 -0.42 0.89 14 22 H 0.16 1.45 8.06 -52.48 -0.42 1.02 14 LS Contribution 233.33 15.07 3.52 3.52 Total: -1.00 -31.25 233.33 -5.37 -36.62 By element: Atomic # 1 Polarization: -1.85 SS G_CDS: -0.74 Total: -2.59 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.24 Total: -0.62 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.64 Total: -31.19 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.44 Total: -19.68 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 35 Polarization: 0.47 SS G_CDS: -2.08 Total: -1.61 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.25 -5.37 -36.62 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306342041.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.087 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds