Wall clock time and date at job start Mon Mar 30 2020 00:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86801 * 119.99758 * 2 1 4 4 H 1.48497 * 109.47017 * 239.99540 * 3 2 1 5 5 H 1.48503 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47273 * 119.99404 * 3 2 1 7 7 C 1.38810 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99783 * 180.02562 * 7 2 1 9 9 O 1.34850 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.34738 * 117.00208 * 180.02562 * 9 7 2 11 11 O 1.21514 * 119.99773 * 359.97438 * 10 9 7 12 12 C 1.47596 * 120.00385 * 179.97438 * 10 9 7 13 13 C 1.40111 * 120.57119 * 0.25391 * 12 10 9 14 14 C 1.38326 * 118.28901 * 180.30883 * 13 12 10 15 15 C 1.38371 * 119.34189 * 359.43601 * 14 13 12 16 16 N 1.31932 * 121.11852 * 0.30062 * 15 14 13 17 17 C 1.31770 * 121.87400 * 359.97438 * 16 15 14 18 18 Br 1.89105 * 119.74134 * 179.97438 * 17 16 15 19 19 H 0.97000 * 120.00059 * 0.02562 * 1 2 3 20 20 H 1.08001 * 120.85739 * 0.02562 * 13 12 10 21 21 H 1.08002 * 120.33176 * 179.71913 * 14 13 12 22 22 H 1.08003 * 119.44148 * 180.28231 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0083 -1.2021 0.0005 8 1 3.0882 -1.2021 0.0010 9 8 1.3340 -2.3700 0.0005 10 6 2.0679 -3.5000 0.0016 11 8 3.2814 -3.4364 0.0021 12 6 1.3979 -4.8151 0.0023 13 6 -0.0005 -4.9025 -0.0036 14 6 -0.5788 -6.1590 0.0039 15 6 0.2333 -7.2793 0.0048 16 7 1.5480 -7.1684 0.0047 17 6 2.1473 -5.9948 0.0032 18 35 4.0362 -5.9060 0.0038 19 1 -0.4850 0.8400 -0.0004 20 1 -0.6111 -4.0117 -0.0091 21 1 -1.6537 -6.2647 0.0042 22 1 -0.2165 -8.2612 0.0060 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306342041.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:55 Heat of formation + Delta-G solvation = -47.482947 kcal Electronic energy + Delta-G solvation = -12904.776044 eV Core-core repulsion = 10278.506399 eV Total energy + Delta-G solvation = -2626.269646 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 270.963 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.63211 -40.42107 -37.27023 -34.43392 -33.86658 -33.38911 -30.87703 -27.78647 -25.65711 -24.30157 -22.35120 -19.89094 -19.06996 -17.87924 -17.35543 -16.90225 -16.71726 -16.15135 -15.33567 -15.24000 -14.62657 -14.22301 -13.67238 -13.22229 -13.18375 -12.42749 -12.22101 -12.05202 -12.00683 -11.97255 -11.05439 -10.96687 -10.70897 -10.08561 -10.04662 -8.57495 -6.32407 -0.62701 -0.05735 0.32704 1.34930 1.38285 1.50021 1.76105 2.04544 2.55443 2.58388 3.00620 3.41855 3.67219 3.87256 3.93957 4.27558 4.70136 4.92852 4.99695 5.15824 5.41656 5.79549 6.49835 6.59154 6.87508 7.69500 8.62392 Molecular weight = 270.96amu Principal moments of inertia in cm(-1) A = 0.028259 B = 0.007291 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.599678 B = 3839.342808 C = 4820.099436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.000 4.000 3 Si 1.016 2.984 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.414 4.414 8 H 0.086 0.914 9 O -0.230 6.230 10 C 0.423 3.577 11 O -0.539 6.539 12 C -0.146 4.146 13 C -0.033 4.033 14 C -0.143 4.143 15 C 0.130 3.870 16 N -0.480 5.480 17 C 0.148 3.852 18 Br 0.012 6.988 19 H 0.281 0.719 20 H 0.151 0.849 21 H 0.198 0.802 22 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 -12.493 0.002 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.201 4.201 3 Si 0.835 3.165 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.103 0.897 9 O -0.138 6.138 10 C 0.270 3.730 11 O -0.436 6.436 12 C -0.152 4.152 13 C -0.060 4.060 14 C -0.163 4.163 15 C -0.028 4.028 16 N -0.191 5.191 17 C -0.069 4.069 18 Br 0.097 6.903 19 H 0.090 0.910 20 H 0.168 0.832 21 H 0.215 0.785 22 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.306 -13.039 0.003 13.042 hybrid contribution -0.337 1.569 -0.002 1.604 sum -0.642 -11.470 0.002 11.488 Atomic orbital electron populations 1.70028 1.07530 1.29634 1.45978 1.26503 0.96906 1.02096 0.94631 0.84698 0.77660 0.74366 0.79765 1.18698 1.18271 1.18692 1.21469 0.92470 0.80765 1.54237 0.89670 1.83874 1.39860 1.13731 1.76321 1.21227 0.86323 0.86067 0.79346 1.90772 1.14998 1.87673 1.50168 1.20010 0.95970 0.90820 1.08397 1.22221 0.91745 1.01188 0.90819 1.22745 1.04475 0.90594 0.98439 1.23940 0.86762 1.01840 0.90281 1.67631 1.14217 1.23735 1.13529 1.22885 0.93947 0.89898 1.00147 1.96752 0.98372 1.98536 1.96685 0.90996 0.83172 0.78539 0.76286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.09 13.67 21.63 0.30 -50.80 14 2 C 0.00 -0.01 5.50 84.89 0.47 0.46 14 3 Si 1.02 42.61 29.55 68.60 2.03 44.64 14 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 14 5 H -0.26 -9.95 7.11 99.48 0.71 -9.24 14 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 14 7 C -0.41 -24.73 9.65 67.96 0.66 -24.08 14 8 H 0.09 5.16 6.86 -2.91 -0.02 5.14 14 9 O -0.23 -13.35 9.07 11.32 0.10 -13.25 14 10 C 0.42 22.01 7.83 70.29 0.55 22.56 14 11 O -0.54 -29.48 12.75 19.79 0.25 -29.23 14 12 C -0.15 -6.02 5.89 -19.99 -0.12 -6.14 14 13 C -0.03 -1.09 9.74 22.75 0.22 -0.87 14 14 C -0.14 -3.01 10.09 22.32 0.23 -2.78 14 15 C 0.13 2.72 11.17 84.71 0.95 3.66 14 16 N -0.48 -14.72 10.31 -189.56 -1.95 -16.68 14 17 C 0.15 5.58 7.21 85.07 0.61 6.20 14 18 Br 0.01 0.44 30.59 -20.37 -0.62 -0.18 14 19 H 0.28 14.53 8.31 -92.71 -0.77 13.76 14 20 H 0.15 5.18 7.70 -2.91 -0.02 5.16 14 21 H 0.20 2.16 8.06 -2.91 -0.02 2.14 14 22 H 0.22 2.17 8.06 -2.91 -0.02 2.14 14 Total: -1.00 -72.23 233.33 4.92 -67.31 By element: Atomic # 1 Polarization: -2.09 SS G_CDS: 1.26 Total: -0.83 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 3.56 Total: -0.99 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -1.66 Total: -67.48 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: 0.36 Total: -42.48 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 35 Polarization: 0.44 SS G_CDS: -0.62 Total: -0.18 kcal Total: -72.23 4.92 -67.31 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306342041.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.825 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds