Wall clock time and date at job start Mon Mar 30 2020 00:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86799 * 120.00229 * 2 1 4 4 H 1.48497 * 109.47211 * 270.00408 * 3 2 1 5 5 H 1.48504 * 109.46868 * 30.00276 * 3 2 1 6 6 H 1.48499 * 109.46830 * 150.00122 * 3 2 1 7 7 C 1.38853 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00001 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.34698 * 116.99673 * 180.02562 * 9 7 2 11 11 O 1.21480 * 119.99872 * 0.02562 * 10 9 7 12 12 C 1.47895 * 119.99924 * 180.02562 * 10 9 7 13 13 C 1.39963 * 120.94210 * 0.28366 * 12 10 9 14 14 C 1.38063 * 119.00294 * 180.29758 * 13 12 10 15 15 N 1.31847 * 120.94276 * 359.68615 * 14 13 12 16 16 C 1.31785 * 122.08994 * 0.02562 * 15 14 13 17 17 C 1.38287 * 120.88316 * 0.02562 * 16 15 14 18 18 Br 1.89100 * 120.51747 * 180.02562 * 17 16 15 19 19 H 0.97003 * 119.99734 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.49198 * 0.02562 * 13 12 10 21 21 H 1.08007 * 119.52411 * 179.70161 * 14 13 12 22 22 H 1.07997 * 119.55727 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4954 2.0464 -1.4000 5 1 1.4454 2.6526 0.7001 6 1 3.5455 1.4400 0.7000 7 6 2.0081 -1.2025 -0.0005 8 1 3.0881 -1.2026 -0.0001 9 8 1.3339 -2.3702 -0.0005 10 6 2.0675 -3.4998 -0.0005 11 8 3.2806 -3.4363 -0.0001 12 6 1.3960 -4.8176 -0.0011 13 6 -0.0003 -4.9138 -0.0076 14 6 -0.5852 -6.1644 -0.0016 15 7 0.1519 -7.2575 0.0038 16 6 1.4691 -7.2137 0.0044 17 6 2.1391 -6.0040 -0.0003 18 35 4.0294 -5.9533 -0.0003 19 1 -0.4850 0.8401 0.0004 20 1 -0.6110 -4.0230 -0.0127 21 1 -1.6620 -6.2483 -0.0017 22 1 2.0327 -8.1349 0.0093 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307098908.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:13 Heat of formation + Delta-G solvation = -27.218804 kcal Electronic energy + Delta-G solvation = -12888.161457 eV Core-core repulsion = 10262.770530 eV Total energy + Delta-G solvation = -2625.390926 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 270.963 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.14461 -38.70494 -35.37489 -32.73096 -32.40790 -31.78309 -29.23660 -26.00086 -24.20747 -22.95984 -20.67686 -17.93706 -17.64542 -16.23438 -15.49583 -15.14727 -14.84440 -14.41924 -14.25908 -13.71138 -13.55748 -12.58761 -11.78049 -11.63683 -11.41763 -10.99278 -10.57024 -10.49337 -10.33289 -9.99561 -9.68762 -9.49904 -8.76206 -8.68919 -8.42646 -6.61410 -4.21220 0.81880 1.10504 1.86849 3.04612 3.10293 3.16497 3.40618 3.73219 4.07201 4.26662 4.47859 4.88305 5.00528 5.04963 5.34964 5.59731 5.82007 6.14739 6.60899 6.65066 7.22816 7.76655 7.89688 8.54845 8.86990 9.65102 10.55580 Molecular weight = 270.96amu Principal moments of inertia in cm(-1) A = 0.027989 B = 0.007234 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.136483 B = 3869.503908 C = 4859.794435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.042 3.958 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.368 4.368 8 H 0.102 0.898 9 O -0.199 6.199 10 C 0.413 3.587 11 O -0.518 6.518 12 C -0.018 4.018 13 C -0.124 4.124 14 C 0.099 3.901 15 N -0.475 5.475 16 C 0.119 3.881 17 C -0.113 4.113 18 Br -0.006 7.006 19 H 0.274 0.726 20 H 0.160 0.840 21 H 0.166 0.834 22 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -10.755 -0.001 10.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.444 4.444 8 H 0.119 0.881 9 O -0.106 6.106 10 C 0.259 3.741 11 O -0.415 6.415 12 C -0.029 4.029 13 C -0.145 4.145 14 C -0.057 4.057 15 N -0.185 5.185 16 C -0.040 4.040 17 C -0.196 4.196 18 Br 0.080 6.920 19 H 0.083 0.917 20 H 0.177 0.823 21 H 0.183 0.817 22 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.225 -11.334 0.008 11.551 hybrid contribution 0.284 1.637 -0.011 1.662 sum 2.510 -9.697 -0.003 10.017 Atomic orbital electron populations 1.69956 1.06175 1.28277 1.44422 1.25442 0.95900 0.99108 0.95946 0.85600 0.79135 0.79172 0.78952 1.19656 1.20137 1.18847 1.21405 0.92761 0.79447 1.50790 0.88090 1.83843 1.39372 1.13202 1.74182 1.20415 0.86179 0.85103 0.82369 1.90797 1.13879 1.86903 1.49902 1.19672 0.93647 0.92080 0.97467 1.22682 0.93962 1.00553 0.97267 1.22856 1.00580 0.87353 0.94960 1.67627 1.06335 1.32609 1.11938 1.22688 0.90203 0.95687 0.95463 1.23126 0.93724 0.95691 1.07018 1.96723 0.99340 1.98976 1.96987 0.91653 0.82274 0.81728 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.66 13.67 55.49 0.76 -22.90 14 2 C 0.04 1.12 5.50 -17.51 -0.10 1.03 14 3 Si 0.95 20.40 29.55 -169.99 -5.02 15.38 14 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 14 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 14 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 14 7 C -0.37 -10.44 9.65 30.96 0.30 -10.14 14 8 H 0.10 2.88 6.86 -52.49 -0.36 2.52 14 9 O -0.20 -5.50 9.10 -21.48 -0.20 -5.69 14 10 C 0.41 10.20 7.85 34.68 0.27 10.47 14 11 O -0.52 -13.45 12.94 -19.25 -0.25 -13.70 14 12 C -0.02 -0.35 5.91 -104.64 -0.62 -0.97 14 13 C -0.12 -2.13 9.71 -39.00 -0.38 -2.51 14 14 C 0.10 1.42 11.17 -17.61 -0.20 1.22 14 15 N -0.47 -7.16 10.33 -13.29 -0.14 -7.29 14 16 C 0.12 1.77 10.94 -17.55 -0.19 1.58 14 17 C -0.11 -2.00 6.29 -38.91 -0.24 -2.25 14 18 Br -0.01 -0.10 30.62 -68.01 -2.08 -2.18 14 19 H 0.27 6.94 8.31 -40.82 -0.34 6.60 14 20 H 0.16 2.77 7.71 -52.49 -0.40 2.37 14 21 H 0.17 1.75 8.06 -52.48 -0.42 1.32 14 22 H 0.17 1.93 8.06 -52.49 -0.42 1.51 14 LS Contribution 233.53 15.07 3.52 3.52 Total: -1.00 -30.65 233.53 -5.31 -35.96 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -0.74 Total: -1.51 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.16 Total: -1.58 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.62 Total: -30.19 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.44 Total: -19.39 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.08 Total: -2.18 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.65 -5.31 -35.96 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307098908.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.744 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds