Wall clock time and date at job start Mon Mar 30 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48510 * 109.47281 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47081 * 299.99684 * 3 2 1 6 6 H 1.48493 * 109.47552 * 59.99752 * 3 2 1 7 7 C 1.37875 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00424 * 173.59944 * 7 2 1 9 9 C 1.50706 * 119.99944 * 353.59769 * 7 2 1 10 10 C 1.53005 * 115.54827 * 85.44170 * 9 7 2 11 11 N 1.46899 * 109.46930 * 65.05317 * 10 9 7 12 12 C 1.46897 * 111.00281 * 185.35294 * 11 10 9 13 13 C 1.50696 * 109.47459 * 180.02562 * 12 11 10 14 14 S 1.75880 * 125.19738 * 270.02063 * 13 12 11 15 15 C 1.75882 * 90.98265 * 179.97438 * 14 13 12 16 16 C 1.33401 * 109.60506 * 0.02562 * 15 14 13 17 17 C 1.33437 * 125.20495 * 90.02155 * 13 12 11 18 18 Cl 1.73601 * 122.54913 * 359.97438 * 17 13 12 19 19 C 1.52994 * 117.50101 * 231.11797 * 9 7 2 20 20 C 1.52995 * 117.49957 * 299.77979 * 9 7 2 21 21 H 0.97003 * 119.99749 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47350 * 305.05632 * 10 9 7 23 23 H 1.08995 * 109.46872 * 185.05016 * 10 9 7 24 24 H 1.00901 * 110.99930 * 61.39346 * 11 10 9 25 25 H 1.09004 * 109.47318 * 59.99471 * 12 11 10 26 26 H 1.09010 * 109.46761 * 300.00044 * 12 11 10 27 27 H 1.08000 * 125.19628 * 179.72961 * 15 14 13 28 28 H 1.08002 * 122.54583 * 179.97438 * 16 15 14 29 29 H 1.09002 * 117.49529 * 215.00177 * 19 9 7 30 30 H 1.08995 * 117.49804 * 0.02562 * 19 9 7 31 31 H 1.08998 * 117.50181 * 359.96713 * 20 9 7 32 32 H 1.09004 * 117.50649 * 144.97176 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0795 -1.1970 -0.1037 9 6 1.2580 -2.4950 0.1467 10 6 0.7036 -3.0870 -1.1507 11 7 1.8168 -3.4590 -2.0341 12 6 1.3227 -3.9136 -3.3407 13 6 2.4904 -4.2863 -4.2174 14 16 3.3371 -3.1880 -5.2991 15 6 4.4225 -4.4757 -5.8062 16 6 4.1066 -5.6042 -5.1688 17 6 3.0401 -5.4999 -4.2917 18 17 2.4629 -6.8454 -3.3589 19 6 1.7456 -3.4728 1.2176 20 6 0.4400 -2.7006 1.4231 21 1 -0.4850 0.8401 -0.0004 22 1 0.0762 -2.3476 -1.6486 23 1 0.1101 -3.9721 -0.9217 24 1 2.4007 -4.1606 -1.6042 25 1 0.7543 -3.1124 -3.8131 26 1 0.6798 -4.7832 -3.2035 27 1 5.2196 -4.3702 -6.5272 28 1 4.6420 -6.5291 -5.3250 29 1 1.6714 -4.5379 0.9979 30 1 2.6059 -3.1750 1.8168 31 1 0.4421 -1.8952 2.1574 32 1 -0.4934 -3.2573 1.3386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308877783.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:23 Heat of formation + Delta-G solvation = 35.172628 kcal Electronic energy + Delta-G solvation = -16098.077028 eV Core-core repulsion = 13404.238343 eV Total energy + Delta-G solvation = -2693.838685 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.049 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.46865 -38.66907 -37.00424 -35.95249 -33.88923 -31.31043 -27.88416 -27.05701 -25.12967 -23.60378 -22.79175 -20.92843 -20.33680 -18.63842 -17.79700 -16.82831 -16.68007 -16.23129 -15.78051 -15.31267 -14.96759 -14.37083 -14.31244 -14.29847 -13.75214 -13.16054 -13.10247 -12.87752 -12.71899 -12.56005 -12.36144 -12.29732 -12.02282 -11.96741 -11.70460 -11.34570 -10.73164 -10.37625 -9.96948 -9.68685 -9.34775 -9.12001 -8.02774 -6.08650 -0.10387 0.35756 0.92041 1.41817 1.44918 1.53739 1.55363 1.63499 2.48873 3.27014 3.30160 3.65566 3.80967 4.07483 4.30447 4.36494 4.50535 4.58297 4.66739 4.72924 4.80620 4.89042 4.99188 5.05395 5.08769 5.26000 5.28676 5.64394 5.74172 5.88608 6.26059 6.47937 6.65491 6.94606 7.56612 9.06582 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.005746 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.017097 B = 4871.496276 C = 5854.755605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.478 4.478 8 H 0.047 0.953 9 C 0.025 3.975 10 C 0.124 3.876 11 N -0.669 5.669 12 C 0.130 3.870 13 C -0.182 4.182 14 S 0.153 5.847 15 C -0.196 4.196 16 C -0.140 4.140 17 C -0.056 4.056 18 Cl -0.057 7.057 19 C -0.189 4.189 20 C -0.163 4.163 21 H 0.256 0.744 22 H 0.046 0.954 23 H 0.009 0.991 24 H 0.337 0.663 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.204 0.796 28 H 0.169 0.831 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 -11.430 -11.779 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.024 3.976 10 C -0.005 4.005 11 N -0.300 5.300 12 C -0.001 4.001 13 C -0.301 4.301 14 S 0.417 5.583 15 C -0.332 4.332 16 C -0.170 4.170 17 C -0.097 4.097 18 Cl -0.029 7.029 19 C -0.227 4.227 20 C -0.202 4.202 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.027 0.973 24 H 0.155 0.845 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.221 0.779 28 H 0.187 0.813 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.260 -9.238 -12.293 16.603 hybrid contribution -0.206 -1.320 0.946 1.636 sum 6.054 -10.558 -11.348 16.640 Atomic orbital electron populations 1.70113 1.06845 1.26543 1.51629 1.25554 0.95473 1.01478 0.95095 0.85746 0.79294 0.80756 0.77268 1.19487 1.21005 1.20969 1.20551 0.92465 0.90009 1.48600 0.93509 1.18928 0.98210 0.93960 0.86459 1.21209 0.90718 0.95400 0.93200 1.60256 1.21418 1.45480 1.02813 1.20283 0.91663 0.98997 0.89112 1.24340 1.04327 0.96074 1.05330 1.84642 1.25838 1.12376 1.35488 1.25976 1.05607 0.94983 1.06665 1.20054 0.97670 1.01342 0.97899 1.20008 0.99980 0.88980 1.00710 1.98348 1.88216 1.44253 1.72045 1.22969 0.97265 0.96372 1.06053 1.22431 0.93384 1.01222 1.03118 0.93503 0.93511 0.97295 0.84500 0.90853 0.93164 0.77883 0.81335 0.89508 0.90619 0.92367 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.52 12.92 21.45 0.28 -52.24 16 2 C 0.02 1.27 5.39 84.65 0.46 1.73 16 3 Si 0.94 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 7 C -0.48 -26.30 8.74 25.60 0.22 -26.08 16 8 H 0.05 2.64 7.82 -2.91 -0.02 2.61 16 9 C 0.03 1.23 1.55 -52.93 -0.08 1.15 16 10 C 0.12 5.50 5.51 86.31 0.48 5.97 16 11 N -0.67 -26.12 6.37 -517.93 -3.30 -29.42 16 12 C 0.13 4.26 5.86 85.56 0.50 4.76 16 13 C -0.18 -5.21 6.02 24.60 0.15 -5.06 16 14 S 0.15 3.80 23.33 -56.49 -1.32 2.49 16 15 C -0.20 -3.61 11.23 66.72 0.75 -2.87 16 16 C -0.14 -2.83 10.07 21.23 0.21 -2.62 16 17 C -0.06 -1.43 6.27 21.24 0.13 -1.29 16 18 Cl -0.06 -1.42 28.16 -2.72 -0.08 -1.49 16 19 C -0.19 -8.06 9.96 30.62 0.30 -7.76 16 20 C -0.16 -7.70 9.41 30.62 0.29 -7.41 16 21 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 22 H 0.05 2.35 8.13 -2.39 -0.02 2.33 16 23 H 0.01 0.37 8.09 -2.39 -0.02 0.35 16 24 H 0.34 12.64 8.78 -89.69 -0.79 11.86 16 25 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.05 1.57 7.51 -2.38 -0.02 1.55 16 27 H 0.20 2.25 8.06 -2.91 -0.02 2.22 16 28 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 30 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -59.96 307.10 1.36 -58.60 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.34 Total: 15.15 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 3.41 Total: -39.49 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.02 Total: -81.66 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.32 Total: 2.49 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.49 kcal Total: -59.96 1.36 -58.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308877783.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.772 kcal (2) G-P(sol) polarization free energy of solvation -59.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds