Wall clock time and date at job start Mon Mar 30 2020 01:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48501 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47068 * 300.00088 * 3 2 1 6 6 H 1.48496 * 109.47217 * 60.00380 * 3 2 1 7 7 C 1.37877 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00203 * 173.58911 * 7 2 1 9 9 C 1.50695 * 120.00124 * 353.59468 * 7 2 1 10 10 C 1.52997 * 115.55483 * 85.44350 * 9 7 2 11 11 N 1.46901 * 109.46957 * 65.04841 * 10 9 7 12 12 C 1.46907 * 110.99890 * 185.35470 * 11 10 9 13 13 C 1.50695 * 109.46873 * 180.02562 * 12 11 10 14 14 C 1.38470 * 122.56041 * 105.22605 * 13 12 11 15 15 C 1.33355 * 114.92989 * 180.30685 * 14 13 12 16 16 S 1.75882 * 109.62099 * 359.73521 * 15 14 13 17 17 C 1.33502 * 122.55666 * 285.02068 * 13 12 11 18 18 Cl 1.73601 * 125.20942 * 359.97438 * 17 13 12 19 19 C 1.53005 * 117.49917 * 231.11477 * 9 7 2 20 20 C 1.53005 * 117.49783 * 299.77337 * 9 7 2 21 21 H 0.96997 * 119.99940 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46993 * 305.05314 * 10 9 7 23 23 H 1.08996 * 109.47664 * 185.05142 * 10 9 7 24 24 H 1.00898 * 110.99735 * 61.40360 * 11 10 9 25 25 H 1.08991 * 109.47401 * 59.99856 * 12 11 10 26 26 H 1.08999 * 109.46694 * 299.99984 * 12 11 10 27 27 H 1.07994 * 122.53828 * 0.02562 * 14 13 12 28 28 H 1.08003 * 125.18808 * 179.76991 * 15 14 13 29 29 H 1.08994 * 117.50178 * 215.00205 * 19 9 7 30 30 H 1.09004 * 117.49818 * 0.02562 * 19 9 7 31 31 H 1.09005 * 117.49581 * 359.97438 * 20 9 7 32 32 H 1.08999 * 117.49911 * 144.97317 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1970 -0.1050 9 6 1.2581 -2.4951 0.1445 10 6 0.7036 -3.0861 -1.1533 11 7 1.8167 -3.4573 -2.0371 12 6 1.3225 -3.9109 -3.3440 13 6 2.4901 -4.2827 -4.2211 14 6 2.8267 -5.5975 -4.4961 15 6 3.8912 -5.7521 -5.2842 16 16 4.5288 -4.1752 -5.7318 17 6 3.2766 -3.3696 -4.7955 18 17 3.0955 -1.6504 -4.6369 19 6 1.7458 -3.4739 1.2146 20 6 0.4402 -2.7019 1.4209 21 1 -0.4850 0.8400 0.0004 22 1 0.0762 -2.3463 -1.6504 23 1 0.1102 -3.9713 -0.9250 24 1 2.4006 -4.1593 -1.6078 25 1 0.7541 -3.1094 -3.8157 26 1 0.6797 -4.7805 -3.2074 27 1 2.2720 -6.4344 -4.0985 28 1 4.2992 -6.7009 -5.6000 29 1 1.6717 -4.5387 0.9941 30 1 2.6063 -3.1765 1.8140 31 1 0.4424 -1.8969 2.1559 32 1 -0.4931 -3.2585 1.3360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308885213.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:13 Heat of formation + Delta-G solvation = 54.060601 kcal Electronic energy + Delta-G solvation = -16237.127346 eV Core-core repulsion = 13544.107705 eV Total energy + Delta-G solvation = -2693.019641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.50171 -36.81108 -36.17668 -33.91117 -31.76436 -29.55105 -26.70684 -25.31531 -23.66311 -22.19036 -20.95596 -19.12187 -18.72307 -17.77043 -16.30046 -15.42803 -14.56789 -14.26820 -14.24882 -13.75606 -13.62437 -13.13771 -13.01984 -12.88180 -12.31344 -11.49844 -11.38711 -11.29531 -11.10131 -10.98519 -10.90032 -10.59889 -10.40821 -10.32053 -10.11341 -9.40940 -8.73147 -8.50445 -8.43149 -8.30917 -7.98612 -7.47916 -5.89667 -3.89781 0.90427 1.25261 1.86261 2.58311 2.64702 3.36497 3.44719 3.49989 4.53155 4.79848 5.10983 5.28208 5.38942 5.42486 5.50654 5.61933 5.97799 5.98877 6.20624 6.34629 6.38810 6.40479 6.54562 6.69107 6.78817 6.93365 7.17017 7.52429 7.63650 7.98283 8.04495 8.20803 8.62880 9.09464 9.72945 11.20542 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.020626 B = 0.006156 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.198221 B = 4547.524893 C = 5467.012254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.463 4.463 8 H 0.059 0.941 9 C 0.054 3.946 10 C 0.109 3.891 11 N -0.658 5.658 12 C 0.117 3.883 13 C -0.091 4.091 14 C -0.118 4.118 15 C -0.216 4.216 16 S 0.118 5.882 17 C -0.116 4.116 18 Cl 0.010 6.990 19 C -0.216 4.216 20 C -0.159 4.159 21 H 0.256 0.744 22 H 0.077 0.923 23 H -0.006 1.006 24 H 0.330 0.670 25 H 0.081 0.919 26 H 0.029 0.971 27 H 0.143 0.857 28 H 0.167 0.833 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 -10.485 -10.771 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.133 4.133 3 Si 0.711 3.289 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.501 4.501 8 H 0.078 0.922 9 C 0.053 3.947 10 C -0.019 4.019 11 N -0.287 5.287 12 C -0.014 4.014 13 C -0.104 4.104 14 C -0.149 4.149 15 C -0.351 4.351 16 S 0.379 5.621 17 C -0.261 4.261 18 Cl 0.038 6.962 19 C -0.253 4.253 20 C -0.197 4.197 21 H 0.065 0.935 22 H 0.095 0.905 23 H 0.012 0.988 24 H 0.147 0.853 25 H 0.099 0.901 26 H 0.047 0.953 27 H 0.161 0.839 28 H 0.184 0.816 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.286 -9.046 -11.867 16.192 hybrid contribution -1.139 -0.321 1.136 1.640 sum 5.147 -9.367 -10.731 15.146 Atomic orbital electron populations 1.70012 1.05748 1.25905 1.50829 1.24901 0.94695 0.98562 0.95180 0.86679 0.80486 0.84416 0.77308 1.19739 1.21302 1.21282 1.20327 0.92847 0.88295 1.48649 0.92241 1.18814 0.97032 0.93707 0.85135 1.21547 0.90496 0.95812 0.94062 1.60278 1.21808 1.44584 1.02054 1.20579 0.91569 0.98581 0.90719 1.18998 0.99723 0.91486 1.00220 1.19962 0.98122 0.96607 1.00160 1.25524 1.02225 1.00660 1.06724 1.84257 1.30433 0.97393 1.50017 1.25097 1.02639 0.91188 1.07161 1.98416 1.96373 1.04975 1.96398 1.22988 0.98495 0.95399 1.08442 1.22517 0.91920 1.01159 1.04079 0.93473 0.90485 0.98828 0.85281 0.90087 0.95289 0.83893 0.81558 0.92262 0.90582 0.90109 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 12.92 55.43 0.72 -24.65 16 2 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 3 Si 0.88 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.46 -12.68 8.74 -34.44 -0.30 -12.98 16 8 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 9 C 0.05 1.31 1.55 -155.66 -0.24 1.07 16 10 C 0.11 2.41 5.51 -3.83 -0.02 2.39 16 11 N -0.66 -12.72 6.37 -115.06 -0.73 -13.45 16 12 C 0.12 1.91 5.50 -4.97 -0.03 1.88 16 13 C -0.09 -1.33 5.32 -106.20 -0.56 -1.90 16 14 C -0.12 -1.40 9.94 -41.20 -0.41 -1.81 16 15 C -0.22 -2.28 11.22 29.03 0.33 -1.95 16 16 S 0.12 1.41 23.34 -107.50 -2.51 -1.10 16 17 C -0.12 -1.77 7.07 29.08 0.21 -1.56 16 18 Cl 0.01 0.16 28.64 -51.86 -1.49 -1.32 16 19 C -0.22 -4.70 9.96 -26.69 -0.27 -4.96 16 20 C -0.16 -3.74 9.41 -26.69 -0.25 -3.99 16 21 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 22 H 0.08 1.91 8.13 -51.93 -0.42 1.49 16 23 H -0.01 -0.13 8.09 -51.93 -0.42 -0.55 16 24 H 0.33 6.10 8.78 -39.29 -0.34 5.76 16 25 H 0.08 1.42 8.00 -51.93 -0.42 1.00 16 26 H 0.03 0.43 8.06 -51.93 -0.42 0.01 16 27 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.17 1.26 8.06 -52.48 -0.42 0.83 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 307.61 15.07 4.64 4.64 Total: -1.00 -28.61 307.61 -10.15 -38.76 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.10 Total: 2.38 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -1.65 Total: -22.03 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.02 Total: -38.10 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.51 Total: -1.10 kcal Atomic # 17 Polarization: 0.16 SS G_CDS: -1.49 Total: -1.32 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.61 -10.15 -38.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308885213.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.816 kcal (2) G-P(sol) polarization free energy of solvation -28.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds