Wall clock time and date at job start Mon Mar 30 2020 01:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48501 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47068 * 300.00088 * 3 2 1 6 6 H 1.48496 * 109.47217 * 60.00380 * 3 2 1 7 7 C 1.37877 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00203 * 173.58911 * 7 2 1 9 9 C 1.50695 * 120.00124 * 353.59468 * 7 2 1 10 10 C 1.52997 * 115.55483 * 85.44350 * 9 7 2 11 11 N 1.46901 * 109.46957 * 65.04841 * 10 9 7 12 12 C 1.46907 * 110.99890 * 185.35470 * 11 10 9 13 13 C 1.50695 * 109.46873 * 180.02562 * 12 11 10 14 14 C 1.38470 * 122.56041 * 105.22605 * 13 12 11 15 15 C 1.33355 * 114.92989 * 180.30685 * 14 13 12 16 16 S 1.75882 * 109.62099 * 359.73521 * 15 14 13 17 17 C 1.33502 * 122.55666 * 285.02068 * 13 12 11 18 18 Cl 1.73601 * 125.20942 * 359.97438 * 17 13 12 19 19 C 1.53005 * 117.49917 * 231.11477 * 9 7 2 20 20 C 1.53005 * 117.49783 * 299.77337 * 9 7 2 21 21 H 0.96997 * 119.99940 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46993 * 305.05314 * 10 9 7 23 23 H 1.08996 * 109.47664 * 185.05142 * 10 9 7 24 24 H 1.00898 * 110.99735 * 61.40360 * 11 10 9 25 25 H 1.08991 * 109.47401 * 59.99856 * 12 11 10 26 26 H 1.08999 * 109.46694 * 299.99984 * 12 11 10 27 27 H 1.07994 * 122.53828 * 0.02562 * 14 13 12 28 28 H 1.08003 * 125.18808 * 179.76991 * 15 14 13 29 29 H 1.08994 * 117.50178 * 215.00205 * 19 9 7 30 30 H 1.09004 * 117.49818 * 0.02562 * 19 9 7 31 31 H 1.09005 * 117.49581 * 359.97438 * 20 9 7 32 32 H 1.08999 * 117.49911 * 144.97317 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1970 -0.1050 9 6 1.2581 -2.4951 0.1445 10 6 0.7036 -3.0861 -1.1533 11 7 1.8167 -3.4573 -2.0371 12 6 1.3225 -3.9109 -3.3440 13 6 2.4901 -4.2827 -4.2211 14 6 2.8267 -5.5975 -4.4961 15 6 3.8912 -5.7521 -5.2842 16 16 4.5288 -4.1752 -5.7318 17 6 3.2766 -3.3696 -4.7955 18 17 3.0955 -1.6504 -4.6369 19 6 1.7458 -3.4739 1.2146 20 6 0.4402 -2.7019 1.4209 21 1 -0.4850 0.8400 0.0004 22 1 0.0762 -2.3463 -1.6504 23 1 0.1102 -3.9713 -0.9250 24 1 2.4006 -4.1593 -1.6078 25 1 0.7541 -3.1094 -3.8157 26 1 0.6797 -4.7805 -3.2074 27 1 2.2720 -6.4344 -4.0985 28 1 4.2992 -6.7009 -5.6000 29 1 1.6717 -4.5387 0.9941 30 1 2.6063 -3.1765 1.8140 31 1 0.4424 -1.8969 2.1559 32 1 -0.4931 -3.2585 1.3360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308885213.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:13 Heat of formation + Delta-G solvation = 37.806038 kcal Electronic energy + Delta-G solvation = -16237.832197 eV Core-core repulsion = 13544.107705 eV Total energy + Delta-G solvation = -2693.724492 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.049 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.64108 -38.53769 -37.36883 -35.40503 -33.86142 -30.67349 -28.17057 -27.27000 -25.11062 -23.40353 -22.74371 -20.91382 -19.89635 -18.79212 -18.06849 -16.98891 -16.48024 -15.77710 -15.62559 -15.25845 -14.82752 -14.61791 -14.34116 -14.11368 -13.83116 -13.19175 -13.07059 -12.90817 -12.60135 -12.52361 -12.42038 -12.34190 -11.99462 -11.96821 -11.53807 -11.28511 -10.70914 -10.35262 -9.90787 -9.50478 -9.40936 -8.98179 -8.02463 -6.06407 -0.09107 0.24218 0.92342 1.37571 1.41251 1.47668 1.51025 1.64481 2.47473 3.28290 3.39814 3.73184 4.06095 4.19439 4.32448 4.43040 4.58535 4.63570 4.74602 4.77880 4.86987 5.02557 5.04074 5.10282 5.31045 5.33874 5.39646 5.67589 5.78879 5.91507 6.37210 6.54059 6.78526 6.96669 7.58114 9.06984 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.020626 B = 0.006156 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.198221 B = 4547.524893 C = 5467.012254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.281 1.281 7 C -0.470 4.470 8 H 0.044 0.956 9 C 0.026 3.974 10 C 0.127 3.873 11 N -0.668 5.668 12 C 0.121 3.879 13 C -0.094 4.094 14 C -0.131 4.131 15 C -0.192 4.192 16 S 0.141 5.859 17 C -0.151 4.151 18 Cl -0.024 7.024 19 C -0.187 4.187 20 C -0.166 4.166 21 H 0.254 0.746 22 H 0.040 0.960 23 H 0.011 0.989 24 H 0.338 0.662 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.168 0.832 28 H 0.205 0.795 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 -12.879 -11.403 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.025 3.975 10 C -0.002 4.002 11 N -0.298 5.298 12 C -0.010 4.010 13 C -0.108 4.108 14 C -0.161 4.161 15 C -0.327 4.327 16 S 0.403 5.597 17 C -0.295 4.295 18 Cl 0.005 6.995 19 C -0.224 4.224 20 C -0.204 4.204 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.029 0.971 24 H 0.155 0.845 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.185 0.815 28 H 0.222 0.778 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.384 -11.450 -12.503 18.492 hybrid contribution -1.417 0.327 1.286 1.942 sum 5.966 -11.123 -11.216 16.886 Atomic orbital electron populations 1.70099 1.06682 1.26299 1.52040 1.25467 0.95372 1.01115 0.95386 0.85898 0.79482 0.81450 0.77205 1.19555 1.21444 1.20740 1.20516 0.92320 0.90059 1.47915 0.93772 1.18920 0.98120 0.93851 0.86605 1.21153 0.90793 0.95289 0.93003 1.60118 1.21295 1.45676 1.02749 1.20498 0.92629 0.98556 0.89344 1.19064 0.98994 0.92894 0.99880 1.20102 0.99123 0.95768 1.01080 1.26015 1.00832 1.01260 1.04600 1.84203 1.28831 0.97862 1.48796 1.25353 1.04883 0.89848 1.09407 1.98396 1.96692 1.07684 1.96725 1.22968 0.97031 0.96518 1.05872 1.22433 0.93497 1.01277 1.03185 0.93650 0.94151 0.97130 0.84459 0.92193 0.93178 0.81495 0.77766 0.89081 0.90840 0.92630 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.24 12.92 21.45 0.28 -52.96 16 2 C 0.03 1.42 5.39 84.65 0.46 1.88 16 3 Si 0.93 45.47 29.54 68.60 2.03 47.49 16 4 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.47 -26.04 8.74 25.60 0.22 -25.81 16 8 H 0.04 2.53 7.82 -2.91 -0.02 2.50 16 9 C 0.03 1.25 1.55 -52.93 -0.08 1.16 16 10 C 0.13 5.55 5.51 86.30 0.48 6.02 16 11 N -0.67 -25.39 6.37 -517.95 -3.30 -28.68 16 12 C 0.12 3.84 5.50 85.55 0.47 4.31 16 13 C -0.09 -2.61 5.32 -20.88 -0.11 -2.72 16 14 C -0.13 -2.67 9.94 21.22 0.21 -2.46 16 15 C -0.19 -3.25 11.22 66.71 0.75 -2.50 16 16 S 0.14 3.06 23.34 -56.49 -1.32 1.74 16 17 C -0.15 -4.45 7.07 66.75 0.47 -3.98 16 18 Cl -0.02 -0.82 28.64 -2.72 -0.08 -0.90 16 19 C -0.19 -7.78 9.96 30.62 0.30 -7.47 16 20 C -0.17 -7.75 9.41 30.62 0.29 -7.46 16 21 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 22 H 0.04 2.05 8.13 -2.39 -0.02 2.03 16 23 H 0.01 0.43 8.09 -2.39 -0.02 0.41 16 24 H 0.34 11.89 8.78 -89.70 -0.79 11.10 16 25 H 0.06 2.14 8.00 -2.39 -0.02 2.13 16 26 H 0.05 1.38 8.06 -2.39 -0.02 1.36 16 27 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 28 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 29 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 30 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 31 H 0.05 2.84 8.14 -2.38 -0.02 2.82 16 32 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -62.31 307.61 1.41 -60.90 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.34 Total: 11.43 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: 3.46 Total: -39.02 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -3.02 Total: -81.65 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.32 Total: 1.74 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -62.31 1.41 -60.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308885213.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.707 kcal (2) G-P(sol) polarization free energy of solvation -62.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds