Wall clock time and date at job start Mon Mar 30 2020 01:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38199 * 119.95908 * 2 1 4 4 C 1.38668 * 119.95532 * 179.97438 * 3 2 1 5 5 O 1.35933 * 120.05675 * 179.97438 * 4 3 2 6 6 C 1.42900 * 116.99986 * 0.02562 * 5 4 3 7 7 C 1.50703 * 109.46925 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99960 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99786 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00116 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99778 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47068 * 59.99850 * 11 9 7 13 13 H 1.48500 * 109.47042 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47268 * 299.99915 * 11 9 7 15 15 C 1.38853 * 119.88066 * 0.25637 * 4 3 2 16 16 Cl 1.73598 * 120.03578 * 179.74540 * 15 4 3 17 17 C 1.38211 * 119.92197 * 359.48604 * 15 4 3 18 18 C 1.38231 * 119.96492 * 179.97438 * 2 1 3 19 19 N 1.48005 * 119.93737 * 0.02562 * 18 2 1 20 20 O 1.21808 * 119.99646 * 216.86653 * 19 18 2 21 21 O 1.21792 * 120.00006 * 36.86146 * 19 18 2 22 22 H 1.08998 * 109.46477 * 95.70992 * 1 2 3 23 23 H 1.09000 * 109.46832 * 215.70947 * 1 2 3 24 24 H 1.08993 * 109.47124 * 335.71291 * 1 2 3 25 25 H 1.08001 * 120.02582 * 359.97438 * 3 2 1 26 26 H 1.09004 * 109.46876 * 60.00053 * 6 5 4 27 27 H 1.08995 * 109.47094 * 300.00037 * 6 5 4 28 28 H 0.97000 * 119.99911 * 180.02562 * 10 9 7 29 29 H 1.08004 * 119.97456 * 180.27850 * 17 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1973 0.0000 4 6 3.5839 1.1972 0.0005 5 8 4.2648 2.3737 0.0000 6 6 3.4877 3.5730 -0.0005 7 6 4.4071 4.7672 -0.0017 8 1 5.4776 4.6245 -0.0016 9 6 3.8814 6.0418 -0.0018 10 7 2.5778 6.2155 -0.0015 11 14 5.0210 7.5219 -0.0026 12 1 5.8773 7.4868 -1.2153 13 1 4.2135 8.7682 -0.0032 14 1 5.8780 7.4875 1.2096 15 6 4.2755 -0.0067 -0.0043 16 17 6.0115 -0.0115 -0.0103 17 6 3.5803 -1.2013 0.0011 18 6 2.1975 -1.1975 0.0005 19 7 1.4553 -2.4780 0.0005 20 8 1.8798 -3.4280 0.6338 21 8 0.4200 -2.5818 -0.6326 22 1 -0.3632 -0.1022 -1.0226 23 1 -0.3633 -0.8345 0.5998 24 1 -0.3633 0.9367 0.4227 25 1 1.6569 2.1325 -0.0004 26 1 2.8589 3.5989 0.8895 27 1 2.8590 3.5981 -0.8905 28 1 2.2080 7.1122 -0.0020 29 1 4.1175 -2.1382 0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309216947.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:16 Heat of formation + Delta-G solvation = -47.514379 kcal Electronic energy + Delta-G solvation = -17977.337759 eV Core-core repulsion = 14701.327531 eV Total energy + Delta-G solvation = -3276.010228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.36645 -41.48264 -38.98892 -37.82104 -37.62615 -35.15764 -33.93502 -32.38046 -29.97432 -28.79529 -26.92418 -25.30223 -23.48803 -23.02732 -20.26918 -19.89473 -19.18851 -18.95750 -18.45297 -17.34578 -16.92347 -16.61195 -16.13121 -15.57415 -15.03397 -14.92022 -14.55432 -14.08787 -14.02276 -13.37725 -13.09494 -13.00394 -12.83534 -12.70348 -12.56355 -12.36709 -12.24697 -12.22084 -12.12007 -12.00722 -11.50131 -10.76091 -10.31693 -9.69765 -8.42922 -6.55888 -1.11396 -0.42212 0.04729 0.20186 0.91831 1.40494 1.42720 1.50917 1.92776 2.03122 2.40368 2.93618 3.16700 3.26675 3.40990 3.69943 4.04911 4.19128 4.24484 4.32649 4.53786 4.62533 4.82456 4.87510 4.88120 4.97384 5.29693 5.44942 5.73268 6.20628 6.50510 6.59258 7.15159 8.68149 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.025230 B = 0.004933 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.524110 B = 5674.761842 C = 6722.509820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.031 3.969 3 C -0.205 4.205 4 C 0.191 3.809 5 O -0.302 6.302 6 C 0.202 3.798 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.020 3.980 10 N -0.919 5.919 11 Si 0.979 3.021 12 H -0.267 1.267 13 H -0.275 1.275 14 H -0.267 1.267 15 C -0.093 4.093 16 Cl -0.031 7.031 17 C 0.000 4.000 18 C -0.095 4.095 19 N 0.040 4.960 20 O -0.179 6.179 21 O -0.151 6.151 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.161 0.839 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.275 0.725 29 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 -11.347 -0.212 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.030 3.970 3 C -0.225 4.225 4 C 0.140 3.860 5 O -0.213 6.213 6 C 0.129 3.871 7 C -0.596 4.596 8 H 0.085 0.915 9 C -0.181 4.181 10 N -0.557 5.557 11 Si 0.802 3.198 12 H -0.191 1.191 13 H -0.200 1.200 14 H -0.191 1.191 15 C -0.121 4.121 16 Cl -0.002 7.002 17 C -0.019 4.019 18 C -0.179 4.179 19 N 0.559 4.441 20 O -0.391 6.391 21 O -0.371 6.371 22 H 0.128 0.872 23 H 0.095 0.905 24 H 0.114 0.886 25 H 0.179 0.821 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.679 -10.537 -0.187 10.560 hybrid contribution 0.227 0.565 0.026 0.610 sum -0.452 -9.972 -0.161 9.983 Atomic orbital electron populations 1.21175 0.86670 1.04851 1.05548 1.19770 0.99005 0.88872 0.89375 1.21309 0.92035 0.99510 1.09625 1.19494 0.91237 0.86959 0.88335 1.86248 1.37798 1.13024 1.84191 1.20548 0.91787 0.78233 0.96525 1.21208 0.94196 0.90154 1.54001 0.91462 1.25777 0.97113 1.01689 0.93507 1.69992 1.12197 1.24392 1.49121 0.85285 0.78253 0.76926 0.79375 1.19130 1.20010 1.19137 1.19823 0.87056 0.91000 1.14218 1.98382 1.05989 1.98730 1.97080 1.20543 0.90567 0.98587 0.92225 1.20482 0.91861 0.83172 1.22357 1.43396 1.00377 1.02273 0.98030 1.94541 1.71875 1.30723 1.41958 1.94505 1.12214 1.89511 1.40830 0.87168 0.90465 0.88563 0.82122 0.96231 0.96182 0.91623 0.80296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.63 71.24 0.61 -2.09 15 2 C 0.03 0.85 5.87 -19.87 -0.12 0.73 15 3 C -0.21 -6.42 8.67 22.36 0.19 -6.23 15 4 C 0.19 6.70 6.68 22.52 0.15 6.85 15 5 O -0.30 -12.95 9.58 -92.79 -0.89 -13.84 15 6 C 0.20 9.68 4.49 71.24 0.32 10.00 15 7 C -0.56 -29.66 9.43 25.60 0.24 -29.42 15 8 H 0.07 3.56 7.81 -2.91 -0.02 3.54 15 9 C 0.02 1.03 5.46 84.65 0.46 1.49 15 10 N -0.92 -49.51 13.29 21.45 0.28 -49.23 15 11 Si 0.98 40.70 29.54 68.60 2.03 42.73 15 12 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 13 H -0.28 -11.01 7.11 99.48 0.71 -10.30 15 14 H -0.27 -10.79 7.11 99.48 0.71 -10.09 15 15 C -0.09 -2.82 6.33 22.41 0.14 -2.68 15 16 Cl -0.03 -0.90 28.51 -2.72 -0.08 -0.98 15 17 C 0.00 0.01 9.44 22.27 0.21 0.22 15 18 C -0.10 -2.61 6.49 36.39 0.24 -2.37 15 19 N 0.04 1.12 4.14 -46.45 -0.19 0.93 15 20 O -0.18 -5.20 18.93 18.88 0.36 -4.84 15 21 O -0.15 -4.21 16.74 18.90 0.32 -3.90 15 22 H 0.11 2.11 8.13 -2.39 -0.02 2.09 15 23 H 0.08 1.63 6.90 -2.39 -0.02 1.62 15 24 H 0.10 1.82 8.05 -2.39 -0.02 1.80 15 25 H 0.16 5.15 6.30 -2.91 -0.02 5.13 15 26 H 0.02 0.97 7.66 -2.38 -0.02 0.95 15 27 H 0.02 1.00 7.66 -2.39 -0.02 0.98 15 28 H 0.27 13.86 8.31 -92.71 -0.77 13.09 15 29 H 0.18 3.83 8.00 -2.91 -0.02 3.80 15 Total: -1.00 -55.56 282.35 5.47 -50.09 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: 1.19 Total: 2.54 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 2.45 Total: -23.50 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.09 Total: -48.30 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.22 Total: -22.58 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -55.56 5.47 -50.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309216947.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.576 kcal (2) G-P(sol) polarization free energy of solvation -55.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds