Wall clock time and date at job start Mon Mar 30 2020 01:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99707 * 2 1 4 4 H 1.48502 * 109.46908 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.46940 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47106 * 120.00221 * 3 2 1 7 7 C 1.37875 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99602 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00501 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.81401 * 102.99785 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47002 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99985 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99944 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.46992 * 179.97438 * 15 14 12 17 17 C 1.33393 * 125.20065 * 89.99565 * 16 15 14 18 18 C 1.38425 * 114.92007 * 179.97438 * 17 16 15 19 19 C 1.33389 * 114.92135 * 0.02562 * 18 17 16 20 20 S 1.75882 * 125.20483 * 269.69419 * 16 15 14 21 21 H 0.96993 * 120.00403 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46728 * 59.99526 * 9 7 2 23 23 H 1.09004 * 109.46818 * 300.00108 * 9 7 2 24 24 H 1.09002 * 109.47085 * 60.00097 * 11 10 9 25 25 H 1.09001 * 109.47417 * 299.99971 * 11 10 9 26 26 H 0.97000 * 119.99708 * 359.97438 * 14 12 11 27 27 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 28 28 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 29 29 H 1.08005 * 122.54147 * 359.96383 * 17 16 15 30 30 H 1.07995 * 122.53675 * 180.02562 * 18 17 16 31 31 H 1.07999 * 125.20519 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 16 2.4300 -3.8779 -0.0021 11 6 1.3518 -5.3366 -0.0011 12 6 2.1958 -6.5851 -0.0016 13 8 3.4055 -6.4993 -0.0020 14 7 1.6062 -7.7971 -0.0015 15 6 2.4267 -9.0108 -0.0015 16 6 1.5310 -10.2227 -0.0008 17 6 1.0735 -10.8413 -1.0904 18 6 0.2645 -11.9369 -0.8428 19 6 0.0645 -12.2077 0.4480 20 16 0.9350 -11.0422 1.4368 21 1 -0.4850 0.8399 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 0.7216 -5.3233 -0.8904 25 1 0.7236 -5.3236 0.8896 26 1 0.6387 -7.8658 -0.0008 27 1 3.0560 -9.0240 0.8885 28 1 3.0559 -9.0240 -0.8915 29 1 1.3158 -10.5123 -2.0902 30 1 -0.1718 -12.5277 -1.6346 31 1 -0.5357 -13.0212 0.8278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009165.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:07 Heat of formation + Delta-G solvation = -9.688959 kcal Electronic energy + Delta-G solvation = -14963.158601 eV Core-core repulsion = 12269.418278 eV Total energy + Delta-G solvation = -2693.740323 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.55822 -38.15438 -34.85939 -33.12332 -31.24473 -29.27060 -28.45603 -26.08727 -23.33105 -22.98634 -20.63749 -19.64794 -17.98129 -16.71084 -16.52449 -16.13314 -15.68541 -15.41653 -15.00309 -14.33415 -13.95399 -13.55399 -13.32333 -13.06913 -12.70614 -12.58936 -12.44236 -12.24637 -12.10900 -11.76862 -11.09540 -10.82983 -10.72718 -10.03165 -9.90327 -9.57789 -9.18926 -9.09426 -8.83731 -8.75766 -8.59012 -6.62822 -6.17813 -4.21560 0.53281 1.24213 1.63122 2.25158 2.45052 2.76162 3.30852 3.33226 3.37760 3.40616 3.87292 4.29906 4.37887 4.69393 4.88379 5.02178 5.17082 5.19530 5.28046 5.41478 5.47687 5.62035 5.74178 5.87893 6.08536 6.28243 7.09794 7.10790 7.41247 7.77307 8.03358 8.27408 8.80383 9.41405 10.93737 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.054239 B = 0.002798 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.108037 B =10006.125454 C =10187.473468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.074 3.926 10 S -0.235 6.235 11 C -0.131 4.131 12 C 0.534 3.466 13 O -0.513 6.513 14 N -0.732 5.732 15 C 0.195 3.805 16 C -0.201 4.201 17 C -0.116 4.116 18 C -0.139 4.139 19 C -0.210 4.210 20 S 0.116 5.884 21 H 0.266 0.734 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.402 0.598 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.772 -24.544 0.037 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.073 4.073 10 S -0.010 6.010 11 C -0.281 4.281 12 C 0.319 3.681 13 O -0.387 6.387 14 N -0.388 5.388 15 C 0.070 3.930 16 C -0.319 4.319 17 C -0.148 4.148 18 C -0.169 4.169 19 C -0.346 4.346 20 S 0.380 5.620 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.236 0.764 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.756 -24.128 1.609 24.193 hybrid contribution -1.879 0.414 -1.516 2.449 sum -2.635 -23.715 0.093 23.861 Atomic orbital electron populations 1.69941 1.06143 1.27420 1.49774 1.24957 0.94978 0.99262 0.94637 0.86401 0.79392 0.81774 0.79038 1.19864 1.21089 1.19859 1.20612 0.93505 0.88647 1.52219 0.91446 1.21163 0.94455 0.91603 1.00057 1.87243 1.17392 0.98335 1.97984 1.23357 1.02413 0.96186 1.06186 1.20038 0.88670 0.83795 0.75590 1.90736 1.14111 1.86478 1.47394 1.46037 1.10354 1.04722 1.77639 1.19594 0.90836 0.78984 1.03635 1.24536 1.07595 1.03475 0.96248 1.20263 0.98842 0.96168 0.99555 1.20207 1.01182 0.98971 0.96543 1.25747 1.06927 1.04892 0.97023 1.84492 1.45199 1.23198 1.09145 0.92479 0.94637 0.94636 0.88022 0.88036 0.76380 0.90373 0.89499 0.83915 0.84094 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.51 -14.60 9.13 -34.44 -0.31 -14.92 16 8 H 0.07 1.94 7.71 -52.48 -0.40 1.53 16 9 C 0.07 1.94 5.70 36.00 0.21 2.15 16 10 S -0.24 -5.38 20.79 -107.50 -2.24 -7.62 16 11 C -0.13 -2.18 6.42 36.01 0.23 -1.95 16 12 C 0.53 8.52 7.85 -10.98 -0.09 8.43 16 13 O -0.51 -10.27 15.86 5.56 0.09 -10.18 16 14 N -0.73 -8.45 5.55 -61.47 -0.34 -8.80 16 15 C 0.19 2.03 6.16 -5.19 -0.03 2.00 16 16 C -0.20 -1.76 5.88 -36.00 -0.21 -1.97 16 17 C -0.12 -0.92 10.05 -41.21 -0.41 -1.33 16 18 C -0.14 -0.97 10.18 -41.21 -0.42 -1.38 16 19 C -0.21 -1.43 11.23 29.04 0.33 -1.11 16 20 S 0.12 0.93 23.33 -107.50 -2.51 -1.58 16 21 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 22 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 23 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 24 H 0.10 1.51 8.14 -51.92 -0.42 1.09 16 25 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 26 H 0.40 3.71 8.46 -40.82 -0.35 3.36 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 305.25 15.07 4.60 4.60 Total: -1.00 -32.55 305.25 -9.18 -41.73 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.69 Total: -1.08 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.81 Total: -8.33 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.40 Total: -34.12 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -4.74 Total: -9.19 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.55 -9.18 -41.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009165.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.041 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds