Wall clock time and date at job start Mon Mar 30 2020 01:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47351 * 269.99584 * 3 2 1 5 5 H 1.48503 * 109.47143 * 29.99885 * 3 2 1 6 6 H 1.48500 * 109.47224 * 149.99814 * 3 2 1 7 7 C 1.37880 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00422 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99314 * 359.97438 * 7 2 1 10 10 S 1.81400 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.81398 * 103.00129 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.47330 * 179.97438 * 11 10 9 13 13 C 1.38476 * 120.01075 * 88.21823 * 12 11 10 14 14 F 1.35102 * 120.02479 * 359.97438 * 13 12 11 15 15 C 1.38431 * 119.94976 * 180.25770 * 13 12 11 16 16 C 1.38228 * 119.97284 * 359.39798 * 15 13 12 17 17 C 1.38226 * 120.01907 * 0.62677 * 16 15 13 18 18 C 1.38168 * 120.01133 * 268.19906 * 12 11 10 19 19 N 1.48007 * 119.98971 * 0.02562 * 18 12 11 20 20 O 1.21799 * 120.00024 * 217.32088 * 19 18 12 21 21 O 1.21797 * 119.99904 * 37.32832 * 19 18 12 22 22 H 0.97000 * 119.99987 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47065 * 60.00481 * 9 7 2 24 24 H 1.09003 * 109.47396 * 300.00108 * 9 7 2 25 25 H 1.09003 * 109.47055 * 59.99939 * 11 10 9 26 26 H 1.09005 * 109.47194 * 300.00159 * 11 10 9 27 27 H 1.07996 * 120.01809 * 179.70481 * 15 13 12 28 28 H 1.07995 * 119.99086 * 180.32316 * 16 15 13 29 29 H 1.08006 * 119.96733 * 179.70266 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 16 2.4298 -3.8779 0.0029 11 6 1.3516 -5.3366 0.0034 12 6 2.1956 -6.5852 0.0039 13 6 2.6144 -7.1377 1.2026 14 9 2.2671 -6.5576 2.3722 15 6 3.3940 -8.2816 1.2013 16 6 3.7432 -8.8780 0.0042 17 6 3.3250 -8.3252 -1.1917 18 6 2.5514 -7.1792 -1.1918 19 7 2.1041 -6.5888 -2.4732 20 8 1.7860 -7.3131 -3.3993 21 8 2.0541 -5.3786 -2.6015 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5574 -0.8880 24 1 0.6246 -2.5563 0.8920 25 1 0.7227 -5.3239 -0.8868 26 1 0.7221 -5.3229 0.8932 27 1 3.7252 -8.7107 2.1354 28 1 4.3471 -9.7734 0.0031 29 1 3.6023 -8.7892 -2.1267 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413011312.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:16 Heat of formation + Delta-G solvation = -40.998362 kcal Electronic energy + Delta-G solvation = -17907.832355 eV Core-core repulsion = 14646.521178 eV Total energy + Delta-G solvation = -3261.311177 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.22415 -43.33716 -40.36966 -37.69360 -35.33001 -34.45758 -32.63208 -30.74819 -29.07345 -27.34713 -25.25314 -23.80708 -23.22521 -20.46027 -19.75921 -18.95007 -18.73194 -17.77609 -17.54442 -17.41583 -17.10055 -16.82426 -16.32401 -15.20565 -15.11311 -14.77409 -14.59572 -14.36902 -14.03560 -13.75323 -13.35023 -13.11746 -12.75454 -12.70935 -12.60203 -12.27194 -12.20462 -12.05301 -11.63564 -10.94278 -10.77343 -10.62320 -10.09912 -8.48484 -8.35862 -6.50049 -1.27144 -0.44382 -0.03562 0.27517 0.93271 1.38133 1.40819 1.52431 1.84045 2.09377 2.35155 2.79133 2.95903 2.98546 3.15991 3.50080 3.78304 3.83853 3.97923 4.15948 4.48361 4.55552 4.80998 4.83186 4.85793 4.89922 5.08510 5.39753 5.53190 5.83163 6.40135 6.56630 7.17892 8.76670 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.005119 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.707564 B = 5467.983649 C = 6154.129063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.092 3.908 10 S -0.263 6.263 11 C -0.060 4.060 12 C -0.068 4.068 13 C 0.104 3.896 14 F -0.128 7.128 15 C -0.085 4.085 16 C -0.058 4.058 17 C -0.062 4.062 18 C -0.022 4.022 19 N 0.018 4.982 20 O -0.133 6.133 21 O -0.190 6.190 22 H 0.271 0.729 23 H 0.011 0.989 24 H 0.015 0.985 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.197 0.803 28 H 0.215 0.785 29 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.174 -22.492 2.222 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.803 3.197 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.081 0.919 9 C -0.055 4.055 10 S -0.034 6.034 11 C -0.207 4.207 12 C -0.071 4.071 13 C 0.082 3.918 14 F -0.106 7.106 15 C -0.103 4.103 16 C -0.076 4.076 17 C -0.081 4.081 18 C -0.106 4.106 19 N 0.537 4.463 20 O -0.359 6.359 21 O -0.396 6.396 22 H 0.080 0.920 23 H 0.030 0.970 24 H 0.033 0.967 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.215 0.785 28 H 0.232 0.768 29 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 9.301 -22.469 2.931 24.493 hybrid contribution -1.935 1.647 -0.350 2.565 sum 7.365 -20.821 2.581 22.236 Atomic orbital electron populations 1.70068 1.07804 1.28689 1.49890 1.25968 0.95931 1.03190 0.93595 0.85215 0.78457 0.77140 0.78853 1.19374 1.19763 1.18770 1.20936 0.93425 0.89942 1.53213 0.91870 1.20773 0.94209 0.92735 0.97783 1.86381 1.19055 1.00182 1.97763 1.22167 0.99466 0.93508 1.05581 1.19087 1.00297 0.95444 0.92304 1.17522 0.99847 0.95046 0.79422 1.91569 1.90330 1.84106 1.44611 1.22109 0.93425 0.91311 1.03452 1.21704 0.97441 1.00761 0.87737 1.21549 0.92946 0.89929 1.03691 1.20829 1.08332 0.99998 0.81423 1.43976 0.98257 1.01106 1.02958 1.94443 1.48564 1.59607 1.33246 1.94810 1.58969 0.96762 1.89088 0.91972 0.97028 0.96700 0.90387 0.88657 0.78542 0.76807 0.80201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.33 15 2 C 0.01 0.82 5.46 84.66 0.46 1.28 15 3 Si 0.98 45.23 29.54 68.60 2.03 47.25 15 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 15 7 C -0.54 -32.28 9.13 25.60 0.23 -32.05 15 8 H 0.06 3.76 7.71 -2.91 -0.02 3.74 15 9 C 0.09 5.30 5.70 71.24 0.41 5.71 15 10 S -0.26 -12.55 20.62 -56.49 -1.16 -13.72 15 11 C -0.06 -2.31 5.04 71.24 0.36 -1.95 15 12 C -0.07 -2.03 5.14 -19.82 -0.10 -2.13 15 13 C 0.10 2.40 7.24 22.37 0.16 2.56 15 14 F -0.13 -3.49 16.51 44.97 0.74 -2.75 15 15 C -0.08 -0.96 10.03 22.31 0.22 -0.74 15 16 C -0.06 -0.42 10.04 22.26 0.22 -0.20 15 17 C -0.06 -0.93 9.66 22.27 0.22 -0.72 15 18 C -0.02 -0.59 6.48 36.37 0.24 -0.35 15 19 N 0.02 0.61 4.11 -46.49 -0.19 0.42 15 20 O -0.13 -4.19 18.94 18.89 0.36 -3.84 15 21 O -0.19 -8.01 15.70 18.89 0.30 -7.71 15 22 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 23 H 0.01 0.70 8.14 -2.39 -0.02 0.68 15 24 H 0.01 0.88 8.14 -2.39 -0.02 0.86 15 25 H 0.08 3.21 6.40 -2.39 -0.02 3.19 15 26 H 0.09 3.55 7.70 -2.39 -0.02 3.54 15 27 H 0.20 0.67 8.06 -2.91 -0.02 0.65 15 28 H 0.22 -0.72 8.06 -2.91 -0.02 -0.74 15 29 H 0.18 1.77 8.01 -2.91 -0.02 1.75 15 Total: -1.00 -76.50 284.47 5.96 -70.55 By element: Atomic # 1 Polarization: -6.48 SS G_CDS: 1.19 Total: -5.30 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 2.42 Total: -28.58 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.09 Total: -55.91 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.65 Total: -11.55 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.74 Total: -2.75 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: -12.55 SS G_CDS: -1.16 Total: -13.72 kcal Total: -76.50 5.96 -70.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011312.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.550 kcal (2) G-P(sol) polarization free energy of solvation -76.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds