Wall clock time and date at job start Mon Mar 30 2020 01:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99929 * 2 1 4 4 H 1.48501 * 109.47241 * 270.00265 * 3 2 1 5 5 H 1.48504 * 109.46996 * 30.00475 * 3 2 1 6 6 H 1.48506 * 109.47166 * 150.00027 * 3 2 1 7 7 C 1.37874 * 120.00468 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00589 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99600 * 359.97438 * 7 2 1 10 10 S 1.81400 * 109.47238 * 179.97438 * 9 7 2 11 11 C 1.81397 * 103.00103 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47334 * 180.02562 * 11 10 9 13 13 C 1.38267 * 119.97113 * 262.64682 * 12 11 10 14 14 C 1.38175 * 120.02450 * 179.72294 * 13 12 11 15 15 C 1.38477 * 119.97299 * 0.54509 * 14 13 12 16 16 F 1.35105 * 120.02685 * 179.74731 * 15 14 13 17 17 C 1.38440 * 119.94978 * 359.73043 * 15 14 13 18 18 C 1.38214 * 119.97335 * 359.97438 * 17 15 14 19 19 N 1.48004 * 119.98473 * 180.02562 * 18 17 15 20 20 O 1.21795 * 120.00279 * 353.57644 * 19 18 17 21 21 O 1.21800 * 119.99588 * 173.57397 * 19 18 17 22 22 H 0.96996 * 119.99843 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47055 * 60.00107 * 9 7 2 24 24 H 1.09003 * 109.47428 * 300.00294 * 9 7 2 25 25 H 1.09005 * 109.46895 * 299.99874 * 11 10 9 26 26 H 1.09000 * 109.47104 * 60.00004 * 11 10 9 27 27 H 1.08002 * 119.98583 * 0.02562 * 13 12 11 28 28 H 1.08004 * 120.01376 * 180.25313 * 14 13 12 29 29 H 1.08001 * 120.00954 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0021 11 6 1.3517 -5.3366 -0.0027 12 6 2.1956 -6.5852 -0.0033 13 6 2.4553 -7.2427 -1.1916 14 6 3.2337 -8.3843 -1.1942 15 6 3.7444 -8.8762 -0.0047 16 9 4.5013 -9.9953 -0.0054 17 6 3.4789 -8.2202 1.1851 18 6 2.7051 -7.0750 1.1845 19 7 2.4217 -6.3731 2.4563 20 8 2.7696 -6.8658 3.5145 21 8 1.8404 -5.3028 2.4448 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 0.7229 -5.3240 0.8877 26 1 0.7221 -5.3227 -0.8924 27 1 2.0536 -6.8611 -2.1187 28 1 3.4398 -8.8955 -2.1230 29 1 3.8771 -8.6027 2.1133 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568770274.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:23 Heat of formation + Delta-G solvation = -38.806543 kcal Electronic energy + Delta-G solvation = -17712.559247 eV Core-core repulsion = 14451.343114 eV Total energy + Delta-G solvation = -3261.216132 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.20020 -43.31437 -40.44996 -37.74852 -35.27394 -33.90103 -33.18119 -30.66296 -28.90599 -27.14367 -25.17401 -24.08749 -23.18366 -20.44882 -19.73530 -18.73118 -18.63936 -17.86703 -17.58298 -17.38598 -16.88613 -16.66051 -16.37834 -15.36908 -15.14577 -14.85810 -14.45929 -14.45333 -13.80612 -13.68501 -13.58098 -12.99652 -12.73645 -12.57484 -12.54615 -12.28868 -12.07925 -11.85249 -11.57027 -10.83289 -10.78421 -10.72671 -10.03655 -8.38329 -8.31700 -6.44488 -1.38355 -0.46090 0.15010 0.31351 1.02851 1.40338 1.41954 1.54001 1.94684 2.12672 2.37880 2.73179 3.03041 3.12846 3.16206 3.54030 3.61638 3.89575 4.06440 4.38674 4.49182 4.55933 4.71306 4.85511 4.97086 5.01932 5.14461 5.38844 5.57980 5.90448 6.45860 6.62129 7.23057 8.80195 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.004424 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.262137 B = 6328.207368 C = 6744.080731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.016 3.984 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.097 3.903 10 S -0.282 6.282 11 C -0.067 4.067 12 C -0.015 4.015 13 C -0.068 4.068 14 C -0.072 4.072 15 C 0.106 3.894 16 F -0.120 7.120 17 C -0.095 4.095 18 C -0.026 4.026 19 N 0.026 4.974 20 O -0.176 6.176 21 O -0.168 6.168 22 H 0.270 0.730 23 H 0.022 0.978 24 H 0.013 0.987 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.189 0.811 28 H 0.200 0.800 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.244 -19.848 -4.644 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.575 4.575 8 H 0.077 0.923 9 C -0.051 4.051 10 S -0.053 6.053 11 C -0.214 4.214 12 C -0.018 4.018 13 C -0.088 4.088 14 C -0.090 4.090 15 C 0.085 3.915 16 F -0.099 7.099 17 C -0.115 4.115 18 C -0.111 4.111 19 N 0.539 4.461 20 O -0.389 6.389 21 O -0.379 6.379 22 H 0.079 0.921 23 H 0.041 0.959 24 H 0.031 0.969 25 H 0.117 0.883 26 H 0.133 0.867 27 H 0.207 0.793 28 H 0.217 0.783 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.325 -20.018 -5.219 21.633 hybrid contribution -1.175 1.036 0.916 1.815 sum 5.149 -18.983 -4.304 20.134 Atomic orbital electron populations 1.70051 1.07584 1.28524 1.50053 1.25869 0.95875 1.02889 0.93847 0.85309 0.78386 0.77696 0.78846 1.19079 1.20089 1.19342 1.20956 0.93309 0.90303 1.52893 0.92256 1.20730 0.93985 0.92170 0.98187 1.86399 1.19976 1.01320 1.97609 1.22642 0.99367 0.91765 1.07585 1.19485 0.95629 0.94612 0.92057 1.21398 0.96614 0.93632 0.97134 1.22014 0.93200 0.94947 0.98867 1.17277 0.95335 0.85596 0.93271 1.91597 1.73037 1.48120 1.97130 1.20952 0.96635 0.92567 1.01379 1.20704 1.08872 0.98189 0.83350 1.43832 0.98843 1.00420 1.03025 1.94453 1.55246 1.69050 1.20102 1.94682 1.40788 1.08424 1.94027 0.92073 0.95933 0.96871 0.88314 0.86723 0.79342 0.78262 0.81100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.58 13.29 21.45 0.28 -54.30 15 2 C 0.02 0.91 5.46 84.65 0.46 1.38 15 3 Si 0.97 44.15 29.54 68.60 2.03 46.17 15 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 7 C -0.54 -30.97 9.13 25.60 0.23 -30.74 15 8 H 0.06 3.43 7.71 -2.91 -0.02 3.41 15 9 C 0.10 5.17 5.70 71.24 0.41 5.58 15 10 S -0.28 -12.23 20.34 -56.49 -1.15 -13.38 15 11 C -0.07 -2.14 5.24 71.24 0.37 -1.76 15 12 C -0.01 -0.37 5.14 -19.86 -0.10 -0.47 15 13 C -0.07 -1.04 9.67 22.26 0.22 -0.82 15 14 C -0.07 -0.79 10.03 22.31 0.22 -0.57 15 15 C 0.11 1.63 7.30 22.37 0.16 1.79 15 16 F -0.12 -1.82 17.27 44.97 0.78 -1.04 15 17 C -0.10 -1.96 9.54 22.31 0.21 -1.74 15 18 C -0.03 -0.70 6.83 36.37 0.25 -0.45 15 19 N 0.03 0.91 4.45 -46.50 -0.21 0.71 15 20 O -0.18 -6.04 18.46 18.89 0.35 -5.69 15 21 O -0.17 -6.88 14.23 18.89 0.27 -6.61 15 22 H 0.27 14.88 8.31 -92.71 -0.77 14.11 15 23 H 0.02 1.23 8.14 -2.39 -0.02 1.21 15 24 H 0.01 0.75 8.14 -2.39 -0.02 0.73 15 25 H 0.10 3.52 5.88 -2.39 -0.01 3.50 15 26 H 0.11 3.09 8.03 -2.39 -0.02 3.07 15 27 H 0.19 1.84 8.05 -2.91 -0.02 1.82 15 28 H 0.20 0.54 8.06 -2.91 -0.02 0.52 15 29 H 0.17 3.17 7.62 -2.91 -0.02 3.14 15 Total: -1.00 -69.79 282.88 5.97 -63.82 By element: Atomic # 1 Polarization: -3.06 SS G_CDS: 1.19 Total: -1.87 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 2.44 Total: -27.81 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.08 Total: -53.59 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.62 Total: -12.30 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.78 Total: -1.04 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -12.23 SS G_CDS: -1.15 Total: -13.38 kcal Total: -69.79 5.97 -63.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568770274.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.014 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds