Wall clock time and date at job start Mon Mar 30 2020 01:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47829 * 2 1 4 4 C 1.50702 * 109.46814 * 239.99855 * 2 1 3 5 5 H 1.08000 * 120.00148 * 115.14979 * 4 2 1 6 6 C 1.37878 * 120.00007 * 295.14573 * 4 2 1 7 7 N 1.31515 * 119.99851 * 185.46187 * 6 4 2 8 8 Si 1.86798 * 120.00273 * 5.46340 * 6 4 2 9 9 H 1.48496 * 109.47105 * 95.00824 * 8 6 4 10 10 H 1.48495 * 109.47520 * 215.01207 * 8 6 4 11 11 H 1.48510 * 109.46835 * 335.01554 * 8 6 4 12 12 N 1.46497 * 109.46925 * 120.00139 * 2 1 3 13 13 C 1.32221 * 120.00024 * 195.34996 * 12 2 1 14 14 C 1.46917 * 121.20754 * 0.16365 * 13 12 2 15 15 Cl 1.73596 * 120.73795 * 0.04383 * 14 13 12 16 16 C 1.34729 * 118.52109 * 180.02562 * 14 13 12 17 17 N 1.35997 * 121.25401 * 0.02562 * 16 14 13 18 18 H 0.97001 * 118.60509 * 180.02562 * 17 16 14 19 19 C 1.35861 * 122.79297 * 359.97438 * 17 16 14 20 20 C 1.34688 * 121.29604 * 0.02562 * 19 17 16 21 21 N 1.48006 * 120.72130 * 180.27185 * 20 19 17 22 22 O 1.21794 * 120.00215 * 359.71380 * 21 20 19 23 23 O 1.21801 * 119.99356 * 179.71769 * 21 20 19 24 24 H 1.09005 * 109.46920 * 65.00517 * 1 2 3 25 25 H 1.08993 * 109.47350 * 185.00863 * 1 2 3 26 26 H 1.08999 * 109.46671 * 305.01321 * 1 2 3 27 27 H 0.97004 * 119.99769 * 180.02562 * 7 6 4 28 28 H 1.08002 * 119.36926 * 180.02562 * 16 14 13 29 29 H 1.08000 * 119.35612 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5870 -0.1656 -1.9800 6 6 1.7836 -2.0561 -1.3993 7 7 2.3120 -2.6997 -2.4173 8 14 0.6964 -2.9650 -0.1823 9 1 -0.6961 -3.0053 -0.6966 10 1 1.1999 -4.3511 -0.0078 11 1 0.7210 -2.2610 1.1251 12 7 2.0183 -0.6906 1.1961 13 6 3.2797 -0.5558 1.5688 14 6 4.2136 0.2827 0.8051 15 17 3.6875 1.1280 -0.6170 16 6 5.4872 0.3814 1.2332 17 7 5.9105 -0.2764 2.3457 18 1 6.8359 -0.1778 2.6196 19 6 5.0923 -1.0648 3.0905 20 6 3.7983 -1.2395 2.7601 21 7 2.9167 -2.0966 3.5840 22 8 3.3606 -2.6573 4.5698 23 8 1.7472 -2.2412 3.2759 24 1 -0.3633 0.4342 -0.9315 25 1 -0.3634 -1.0237 0.0897 26 1 -0.3633 0.5896 0.8417 27 1 2.1368 -3.6463 -2.5363 28 1 6.1852 0.9944 0.6824 29 1 5.4874 -1.5620 3.9640 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596107610.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:43 Heat of formation + Delta-G solvation = 90.493637 kcal Electronic energy + Delta-G solvation = -19301.170870 eV Core-core repulsion = 16063.437869 eV Total energy + Delta-G solvation = -3237.733001 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.051 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.41764 -39.89419 -36.89462 -35.79346 -35.36968 -32.98246 -31.88890 -31.11563 -28.67790 -26.05303 -24.96259 -22.94456 -22.25163 -20.52873 -19.69725 -18.16811 -17.59278 -16.92721 -16.83053 -16.27057 -15.34653 -14.96718 -14.50693 -14.37387 -13.27078 -13.19427 -12.62359 -12.06750 -11.95650 -11.58990 -11.20717 -10.94794 -10.87646 -10.76803 -10.40870 -10.27049 -10.16305 -9.99748 -9.44355 -9.09358 -8.77141 -8.36164 -7.63634 -6.88896 -6.00988 -4.06239 0.45219 1.58222 1.79960 1.97795 2.55211 3.05117 3.51568 3.61659 3.82539 4.08948 4.24395 4.57120 4.72501 4.89681 5.20086 5.32625 5.48771 5.60119 6.23917 6.43978 6.59867 6.73931 6.80422 6.84563 7.04048 7.17462 7.41279 7.72189 8.37416 8.41652 8.71529 8.96661 9.62768 11.06549 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.011817 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.107373 B = 2368.956432 C = 3350.645471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.126 3.874 3 H 0.068 0.932 4 C -0.520 4.520 5 H 0.084 0.916 6 C 0.084 3.916 7 N -0.896 5.896 8 Si 0.821 3.179 9 H -0.291 1.291 10 H -0.308 1.308 11 H -0.158 1.158 12 N -0.429 5.429 13 C 0.167 3.833 14 C -0.064 4.064 15 Cl 0.010 6.990 16 C 0.047 3.953 17 N -0.589 5.589 18 H 0.427 0.573 19 C 0.213 3.787 20 C -0.110 4.110 21 N 0.058 4.942 22 O -0.237 6.237 23 O -0.112 6.112 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.029 0.971 27 H 0.262 0.738 28 H 0.168 0.832 29 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.652 8.096 9.953 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.018 3.982 3 H 0.085 0.915 4 C -0.558 4.558 5 H 0.101 0.899 6 C -0.120 4.120 7 N -0.533 5.533 8 Si 0.649 3.351 9 H -0.219 1.219 10 H -0.236 1.236 11 H -0.080 1.080 12 N -0.142 5.142 13 C -0.020 4.020 14 C -0.099 4.099 15 Cl 0.040 6.960 16 C -0.076 4.076 17 N -0.201 5.201 18 H 0.263 0.737 19 C 0.078 3.922 20 C -0.207 4.207 21 N 0.568 4.432 22 O -0.430 6.430 23 O -0.338 6.338 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.185 0.815 29 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 10.102 8.018 9.531 16.037 hybrid contribution 0.169 -0.607 -0.135 0.644 sum 10.270 7.411 9.397 15.770 Atomic orbital electron populations 1.21928 0.97292 1.00429 0.99062 1.20766 0.92972 0.96366 0.88070 0.91460 1.21275 1.36811 0.94512 1.03197 0.89856 1.25051 0.94654 0.97451 0.94880 1.69912 1.43476 1.09619 1.30267 0.87943 0.79755 0.78851 0.88503 1.21861 1.23601 1.08037 1.73386 1.10230 1.15002 1.15604 1.19920 0.92463 0.97512 0.92076 1.22307 0.93711 1.01014 0.92918 1.98397 1.88129 1.75228 1.34250 1.21135 0.95946 1.00036 0.90476 1.40522 1.13335 1.42406 1.23833 0.73666 1.21095 0.89300 0.87991 0.93777 1.20846 0.90939 1.09214 0.99692 1.42788 1.01650 0.99151 0.99574 1.94430 1.79602 1.50540 1.18438 1.94673 0.99362 1.65533 1.74227 0.92795 0.93546 0.95207 0.92882 0.81459 0.79928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.95 37.16 0.33 -2.63 15 2 C 0.13 3.01 2.38 -69.08 -0.16 2.84 15 3 H 0.07 1.50 4.92 -51.93 -0.26 1.24 15 4 C -0.52 -14.23 7.29 -34.44 -0.25 -14.48 15 5 H 0.08 2.38 6.24 -52.49 -0.33 2.05 15 6 C 0.08 2.48 5.45 -17.82 -0.10 2.39 15 7 N -0.90 -28.08 13.96 55.43 0.77 -27.30 15 8 Si 0.82 22.64 23.91 -169.99 -4.06 18.58 15 9 H -0.29 -8.02 7.11 56.52 0.40 -7.62 15 10 H -0.31 -8.91 7.11 56.52 0.40 -8.50 15 11 H -0.16 -4.20 3.56 56.52 0.20 -4.00 15 12 N -0.43 -10.18 5.26 -50.47 -0.27 -10.45 15 13 C 0.17 3.43 6.81 -80.72 -0.55 2.88 15 14 C -0.06 -1.11 6.31 -37.31 -0.24 -1.34 15 15 Cl 0.01 0.19 20.64 -51.86 -1.07 -0.88 15 16 C 0.05 0.54 10.92 -16.95 -0.19 0.35 15 17 N -0.59 -5.00 5.22 -13.11 -0.07 -5.07 15 18 H 0.43 1.42 8.88 -40.82 -0.36 1.05 15 19 C 0.21 2.42 10.69 -17.02 -0.18 2.24 15 20 C -0.11 -1.95 7.04 -77.74 -0.55 -2.50 15 21 N 0.06 1.16 4.45 35.03 0.16 1.32 15 22 O -0.24 -4.44 18.44 -29.46 -0.54 -4.98 15 23 O -0.11 -2.60 16.29 -29.46 -0.48 -3.08 15 24 H 0.05 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.05 1.13 3.68 -51.93 -0.19 0.94 15 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 27 H 0.26 7.91 8.31 -40.82 -0.34 7.57 15 28 H 0.17 1.31 8.06 -52.49 -0.42 0.88 15 29 H 0.18 1.38 7.56 -52.49 -0.40 0.98 15 LS Contribution 255.71 15.07 3.85 3.85 Total: -1.00 -37.01 255.71 -5.72 -42.74 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: -2.14 Total: -4.47 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.88 Total: -10.26 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.60 Total: -41.50 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -1.02 Total: -8.06 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.06 Total: 18.58 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -1.07 Total: -0.88 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -37.01 -5.72 -42.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596107610.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.229 kcal (2) G-P(sol) polarization free energy of solvation -37.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds