Wall clock time and date at job start Mon Mar 30 2020 01:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48503 * 109.47121 * 239.99912 * 3 2 1 5 5 H 1.48497 * 109.47183 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46938 * 119.99850 * 3 2 1 7 7 C 1.38948 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99646 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99841 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00473 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00146 * 179.97438 * 10 9 7 13 13 O 1.42895 * 109.47238 * 179.97438 * 12 10 9 14 14 C 1.34913 * 116.99976 * 180.02562 * 13 12 10 15 15 O 1.21635 * 119.99846 * 0.02562 * 14 13 12 16 16 C 1.46355 * 120.00083 * 180.02562 * 14 13 12 17 17 C 1.36838 * 125.43132 * 180.02562 * 16 14 13 18 18 C 1.37661 * 113.24937 * 180.02562 * 17 16 14 19 19 O 1.36218 * 122.49447 * 180.02562 * 18 17 16 20 20 C 1.34130 * 115.01084 * 359.97438 * 18 17 16 21 21 S 1.70593 * 110.97831 * 0.23004 * 20 18 17 22 22 H 0.96998 * 119.99985 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00522 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.46496 * 59.99882 * 12 10 9 25 25 H 1.09003 * 109.47208 * 300.00246 * 12 10 9 26 26 H 1.07998 * 123.37703 * 0.04464 * 17 16 14 27 27 H 0.96701 * 114.00227 * 269.99973 * 19 18 17 28 28 H 1.08002 * 124.50814 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8630 0.0000 13 8 2.1724 -5.9491 -0.0007 14 6 1.6567 -7.1958 -0.0008 15 8 0.4509 -7.3551 -0.0008 16 6 2.5483 -8.3565 -0.0010 17 6 2.1473 -9.6648 -0.0016 18 6 3.1973 -10.5549 -0.0011 19 8 3.0126 -11.9045 -0.0021 20 6 4.4159 -9.9945 -0.0005 21 16 4.3052 -8.2921 0.0057 22 1 -0.4850 0.8400 0.0004 23 1 0.3534 -2.3907 0.0002 24 1 0.6168 -4.9208 -0.8897 25 1 0.6174 -4.9205 0.8903 26 1 1.1109 -9.9685 -0.0028 27 1 2.9583 -12.2948 0.8810 28 1 5.3437 -10.5474 0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732354128.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:42 Heat of formation + Delta-G solvation = -125.442004 kcal Electronic energy + Delta-G solvation = -17320.150770 eV Core-core repulsion = 14042.805053 eV Total energy + Delta-G solvation = -3277.345717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.039 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45772 -39.38554 -38.13761 -36.34893 -35.33252 -34.01554 -31.40364 -30.18837 -28.35336 -25.56902 -24.41649 -22.10080 -19.87296 -19.58235 -19.07852 -18.08863 -17.54518 -16.73981 -16.51571 -16.42747 -15.63159 -15.10804 -14.52087 -14.15397 -14.03179 -13.79789 -13.45994 -13.00780 -12.75332 -12.25610 -12.07794 -11.63006 -11.48790 -11.12304 -10.98448 -10.66446 -10.49696 -10.43891 -10.30188 -9.60763 -9.23396 -8.66243 -8.54288 -8.09610 -6.50887 -3.93122 0.11353 1.18701 1.62608 1.86420 2.57080 2.77283 3.14835 3.22444 3.26946 3.72063 4.03530 4.14528 4.59258 4.72062 5.00648 5.06315 5.13843 5.37876 5.51490 5.66629 5.75509 5.85398 6.02666 6.49132 7.23398 7.46619 7.72122 7.93221 8.47007 9.05644 9.37778 9.87482 10.66163 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.052343 B = 0.003406 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.807081 B = 8217.858414 C = 8734.957753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.060 3.940 13 O -0.317 6.317 14 C 0.535 3.465 15 O -0.499 6.499 16 C -0.249 4.249 17 C -0.073 4.073 18 C 0.072 3.928 19 O -0.482 6.482 20 C -0.281 4.281 21 S 0.314 5.686 22 H 0.275 0.725 23 H 0.395 0.605 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.161 0.839 27 H 0.388 0.612 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 -18.281 1.677 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.018 4.018 13 O -0.232 6.232 14 C 0.378 3.622 15 O -0.389 6.389 16 C -0.368 4.368 17 C -0.107 4.107 18 C 0.015 3.985 19 O -0.291 6.291 20 C -0.419 4.419 21 S 0.582 5.418 22 H 0.084 0.916 23 H 0.229 0.771 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.179 0.821 27 H 0.243 0.757 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.975 -16.870 1.068 17.928 hybrid contribution -1.504 -0.552 0.479 1.672 sum 4.471 -17.422 1.547 18.053 Atomic orbital electron populations 1.69609 1.06002 1.28622 1.49470 1.25321 0.95695 0.99890 0.96829 0.85845 0.78740 0.80030 0.79190 1.19742 1.20865 1.19757 1.19680 0.93464 0.81735 1.48365 0.87628 1.41690 1.09397 1.04054 1.63686 1.19270 0.88304 0.83983 0.86123 1.90561 1.13343 1.86739 1.55357 1.22442 0.91119 0.84557 1.03664 1.86181 1.40136 1.13620 1.83235 1.19617 0.86332 0.82807 0.73419 1.90888 1.15176 1.86706 1.46132 1.23355 0.98792 0.94990 1.19645 1.20850 1.01709 0.90011 0.98115 1.16881 0.90322 0.84579 1.06747 1.84963 1.94799 1.15872 1.33470 1.25884 1.03049 1.02464 1.10550 1.83796 0.97863 0.96761 1.63367 0.91553 0.77113 0.89513 0.89512 0.82148 0.75706 0.80603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.92 13.05 55.50 0.72 -23.19 15 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 15 3 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 15 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 15 8 H 0.11 3.01 7.16 -52.49 -0.38 2.63 15 9 N -0.55 -13.86 5.29 -10.96 -0.06 -13.92 15 10 C 0.44 10.50 7.86 -10.98 -0.09 10.42 15 11 O -0.58 -15.79 16.08 -14.37 -0.23 -16.03 15 12 C 0.06 1.15 5.85 36.01 0.21 1.36 15 13 O -0.32 -5.96 9.50 -47.84 -0.45 -6.42 15 14 C 0.53 8.91 7.91 34.00 0.27 9.18 15 15 O -0.50 -9.01 16.61 -19.37 -0.32 -9.33 15 16 C -0.25 -3.37 6.45 -36.83 -0.24 -3.61 15 17 C -0.07 -0.85 10.00 -40.30 -0.40 -1.25 15 18 C 0.07 0.73 6.68 -41.24 -0.28 0.45 15 19 O -0.48 -4.18 13.62 -20.44 -0.28 -4.46 15 20 C -0.28 -2.57 10.90 29.29 0.32 -2.25 15 21 S 0.31 3.49 22.91 -107.50 -2.46 1.02 15 22 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 23 H 0.40 9.42 7.90 -40.82 -0.32 9.09 15 24 H 0.09 1.51 8.13 -51.93 -0.42 1.08 15 25 H 0.09 1.50 8.13 -51.93 -0.42 1.07 15 26 H 0.16 1.75 8.06 -52.49 -0.42 1.33 15 27 H 0.39 1.43 9.07 45.56 0.41 1.85 15 28 H 0.18 1.17 8.06 -52.49 -0.42 0.75 15 LS Contribution 283.55 15.07 4.27 4.27 Total: -1.00 -33.06 283.55 -5.39 -38.45 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -1.11 Total: 7.64 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.44 Total: 6.41 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.67 Total: -37.11 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.29 Total: -36.23 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -2.46 Total: 1.02 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.06 -5.39 -38.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732354128.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.994 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds