Wall clock time and date at job start Mon Mar 30 2020 01:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48503 * 109.47121 * 239.99912 * 3 2 1 5 5 H 1.48497 * 109.47183 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46938 * 119.99850 * 3 2 1 7 7 C 1.38948 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99646 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99841 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00473 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00146 * 179.97438 * 10 9 7 13 13 O 1.42895 * 109.47238 * 179.97438 * 12 10 9 14 14 C 1.34913 * 116.99976 * 180.02562 * 13 12 10 15 15 O 1.21635 * 119.99846 * 0.02562 * 14 13 12 16 16 C 1.46355 * 120.00083 * 180.02562 * 14 13 12 17 17 C 1.36838 * 125.43132 * 180.02562 * 16 14 13 18 18 C 1.37661 * 113.24937 * 180.02562 * 17 16 14 19 19 O 1.36218 * 122.49447 * 180.02562 * 18 17 16 20 20 C 1.34130 * 115.01084 * 359.97438 * 18 17 16 21 21 S 1.70593 * 110.97831 * 0.23004 * 20 18 17 22 22 H 0.96998 * 119.99985 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00522 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.46496 * 59.99882 * 12 10 9 25 25 H 1.09003 * 109.47208 * 300.00246 * 12 10 9 26 26 H 1.07998 * 123.37703 * 0.04464 * 17 16 14 27 27 H 0.96701 * 114.00227 * 269.99973 * 19 18 17 28 28 H 1.08002 * 124.50814 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8630 0.0000 13 8 2.1724 -5.9491 -0.0007 14 6 1.6567 -7.1958 -0.0008 15 8 0.4509 -7.3551 -0.0008 16 6 2.5483 -8.3565 -0.0010 17 6 2.1473 -9.6648 -0.0016 18 6 3.1973 -10.5549 -0.0011 19 8 3.0126 -11.9045 -0.0021 20 6 4.4159 -9.9945 -0.0005 21 16 4.3052 -8.2921 0.0057 22 1 -0.4850 0.8400 0.0004 23 1 0.3534 -2.3907 0.0002 24 1 0.6168 -4.9208 -0.8897 25 1 0.6174 -4.9205 0.8903 26 1 1.1109 -9.9685 -0.0028 27 1 2.9583 -12.2948 0.8810 28 1 5.3437 -10.5474 0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732354128.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:42 Heat of formation + Delta-G solvation = -149.889248 kcal Electronic energy + Delta-G solvation = -17321.210882 eV Core-core repulsion = 14042.805053 eV Total energy + Delta-G solvation = -3278.405829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.039 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.80428 -40.31162 -39.89837 -37.73804 -36.17655 -36.03560 -33.42420 -31.26106 -29.81493 -26.98380 -25.95900 -23.17334 -21.49212 -20.79942 -20.18825 -20.04213 -18.33319 -18.07091 -17.90499 -17.85957 -17.02533 -16.55031 -16.02887 -15.80973 -15.65641 -14.81563 -14.56288 -14.32454 -14.12416 -13.66740 -13.55129 -13.37016 -12.93058 -12.48656 -12.33283 -12.12444 -11.92913 -11.91479 -11.75072 -11.57043 -10.52498 -10.12573 -10.11451 -9.49724 -8.52116 -6.03018 -0.81918 0.30470 0.79331 0.96159 1.23687 1.37998 1.44687 1.56052 1.65791 1.86469 2.29703 2.98060 3.13279 3.40260 3.69529 3.92320 4.02495 4.12026 4.19334 4.21696 4.55130 4.94147 5.04261 5.14937 5.36937 5.88100 6.38829 6.51077 6.76440 7.02279 7.38972 7.92051 8.64563 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.052343 B = 0.003406 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.807081 B = 8217.858414 C = 8734.957753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.557 5.557 10 C 0.437 3.563 11 O -0.615 6.615 12 C 0.070 3.930 13 O -0.334 6.334 14 C 0.538 3.462 15 O -0.521 6.521 16 C -0.288 4.288 17 C -0.058 4.058 18 C 0.067 3.933 19 O -0.487 6.487 20 C -0.251 4.251 21 S 0.310 5.690 22 H 0.281 0.719 23 H 0.400 0.600 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.164 0.836 27 H 0.411 0.589 28 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 -19.364 1.781 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.007 4.007 13 O -0.249 6.249 14 C 0.383 3.617 15 O -0.412 6.412 16 C -0.406 4.406 17 C -0.094 4.094 18 C 0.011 3.989 19 O -0.300 6.300 20 C -0.390 4.390 21 S 0.578 5.422 22 H 0.090 0.910 23 H 0.235 0.765 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.181 0.819 27 H 0.269 0.731 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.456 -17.981 1.188 19.142 hybrid contribution -1.633 -0.384 0.457 1.738 sum 4.823 -18.365 1.645 19.059 Atomic orbital electron populations 1.69672 1.06977 1.29814 1.49023 1.26147 0.96593 1.02638 0.95598 0.84895 0.77713 0.76027 0.79147 1.19477 1.19438 1.19448 1.19702 0.93001 0.83306 1.50774 0.89617 1.41730 1.09586 1.04163 1.63916 1.20014 0.88064 0.85232 0.84304 1.90524 1.15280 1.87626 1.56770 1.22217 0.90447 0.82530 1.05519 1.86170 1.40506 1.14424 1.83825 1.20021 0.86653 0.82516 0.72497 1.90861 1.16080 1.86751 1.47534 1.23200 0.99728 0.94330 1.23378 1.21042 1.02504 0.89590 0.96247 1.16799 0.90029 0.85128 1.06988 1.84929 1.94645 1.14765 1.35651 1.26184 1.04025 1.01252 1.07544 1.83845 0.96275 0.98534 1.63503 0.90955 0.76543 0.87637 0.87511 0.81864 0.73071 0.77534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.46 13.05 21.66 0.28 -48.18 15 2 C -0.01 -0.47 5.50 84.92 0.47 0.00 15 3 Si 1.00 41.76 29.55 68.60 2.03 43.79 15 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 15 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 7 C -0.34 -18.93 9.68 84.04 0.81 -18.11 15 8 H 0.09 5.05 7.16 -2.91 -0.02 5.02 15 9 N -0.56 -28.53 5.29 -306.98 -1.62 -30.15 15 10 C 0.44 21.36 7.86 87.66 0.69 22.04 15 11 O -0.62 -34.70 16.08 15.95 0.26 -34.44 15 12 C 0.07 2.69 5.85 71.24 0.42 3.11 15 13 O -0.33 -12.66 9.50 -51.81 -0.49 -13.15 15 14 C 0.54 17.92 7.91 69.93 0.55 18.47 15 15 O -0.52 -18.74 16.61 19.40 0.32 -18.42 15 16 C -0.29 -7.62 6.45 24.05 0.16 -7.46 15 17 C -0.06 -1.28 10.00 21.80 0.22 -1.06 15 18 C 0.07 1.18 6.68 21.20 0.14 1.32 15 19 O -0.49 -6.91 13.62 -96.04 -1.31 -8.22 15 20 C -0.25 -3.85 10.90 66.88 0.73 -3.13 15 21 S 0.31 6.53 22.91 -56.49 -1.29 5.23 15 22 H 0.28 13.91 8.31 -92.71 -0.77 13.14 15 23 H 0.40 19.33 7.90 -92.71 -0.73 18.60 15 24 H 0.11 3.63 8.13 -2.39 -0.02 3.61 15 25 H 0.11 3.64 8.13 -2.39 -0.02 3.62 15 26 H 0.16 3.38 8.06 -2.91 -0.02 3.35 15 27 H 0.41 1.66 9.07 -74.06 -0.67 0.98 15 28 H 0.21 1.86 8.06 -2.91 -0.02 1.84 15 Total: -1.00 -71.10 283.55 2.20 -68.90 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.16 Total: 19.45 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 4.18 Total: 15.18 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -1.34 Total: -78.33 kcal Atomic # 8 Polarization: -73.01 SS G_CDS: -1.22 Total: -74.23 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 6.53 SS G_CDS: -1.29 Total: 5.23 kcal Total: -71.10 2.20 -68.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732354128.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.985 kcal (2) G-P(sol) polarization free energy of solvation -71.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds