Wall clock time and date at job start Mon Mar 30 2020 00:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99916 * 2 1 4 4 C 1.50701 * 109.47216 * 66.04163 * 3 2 1 5 5 H 1.07997 * 119.99975 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99942 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99695 * 0.02562 * 6 4 3 8 8 Si 1.86792 * 120.00124 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47231 * 60.00164 * 8 6 4 10 10 H 1.48500 * 109.47220 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47356 * 300.00315 * 8 6 4 12 12 C 1.46899 * 110.99907 * 236.04241 * 2 1 3 13 13 C 1.53002 * 109.47399 * 293.95030 * 12 2 1 14 14 H 1.09008 * 109.46695 * 60.00166 * 13 12 2 15 15 O 1.42901 * 109.47077 * 300.00715 * 13 12 2 16 16 C 1.52993 * 109.47169 * 180.02562 * 13 12 2 17 17 N 1.46905 * 109.47039 * 185.00340 * 16 13 12 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.46916 * 180.02562 * 18 17 16 20 20 C 1.52996 * 109.46700 * 179.97438 * 19 18 17 21 21 C 1.53778 * 113.61948 * 274.13211 * 20 19 18 22 22 C 1.53945 * 87.02319 * 220.05204 * 21 20 19 23 23 C 1.53780 * 87.11204 * 25.36349 * 22 21 20 24 24 H 1.09001 * 109.46666 * 183.95914 * 1 2 3 25 25 H 1.08994 * 109.47336 * 303.95370 * 1 2 3 26 26 H 1.08995 * 109.47233 * 63.96050 * 1 2 3 27 27 H 1.09001 * 109.46733 * 186.04639 * 3 2 1 28 28 H 1.09008 * 109.46516 * 306.04381 * 3 2 1 29 29 H 0.97010 * 119.99691 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46508 * 173.95397 * 12 2 1 31 31 H 1.08994 * 109.47115 * 53.95912 * 12 2 1 32 32 H 0.96697 * 113.99359 * 299.99075 * 15 13 12 33 33 H 1.09001 * 109.47393 * 65.00621 * 16 13 12 34 34 H 1.08998 * 109.47408 * 305.00267 * 16 13 12 35 35 H 1.00901 * 110.99869 * 56.04956 * 17 16 13 36 36 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 37 37 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 38 38 H 1.08995 * 109.46615 * 299.99641 * 19 18 17 39 39 H 1.08996 * 109.46939 * 60.00272 * 19 18 17 40 40 H 1.09006 * 112.85039 * 45.33384 * 20 19 18 41 41 H 1.09005 * 113.61411 * 334.57705 * 21 20 19 42 42 H 1.09002 * 113.61195 * 105.46765 * 21 20 19 43 43 H 1.08998 * 113.53847 * 270.81046 * 22 21 20 44 44 H 1.09003 * 113.66538 * 139.93182 * 22 21 20 45 45 H 1.09005 * 113.61054 * 220.08902 * 23 22 21 46 46 H 1.08997 * 113.69497 * 89.19977 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0276 3.3492 1.5288 7 7 2.7128 4.0015 0.6153 8 14 1.5837 4.1866 3.1384 9 1 2.1754 3.4289 4.2702 10 1 2.1158 5.5730 3.1383 11 1 0.1066 4.2238 3.2862 12 6 1.9955 -0.7661 -1.1375 13 6 1.6316 -2.2427 -0.9702 14 1 0.5472 -2.3476 -0.9322 15 8 2.2010 -2.7391 0.2428 16 6 2.1804 -3.0406 -2.1546 17 7 1.7300 -4.4354 -2.0562 18 6 2.2395 -5.2336 -3.1793 19 6 1.7501 -6.6768 -3.0427 20 6 2.2803 -7.5079 -4.2127 21 6 1.3933 -7.4420 -5.4671 22 6 1.6675 -8.9467 -5.6421 23 6 1.9139 -8.9989 -4.1250 24 1 -0.3633 -1.0252 0.0710 25 1 -0.3634 0.5739 0.8524 26 1 -0.3633 0.4511 -0.9233 27 1 3.0798 1.3444 -0.1083 28 1 1.5611 1.9273 -0.8310 29 1 2.9874 4.9177 0.7772 30 1 3.0797 -0.6611 -1.1755 31 1 1.5612 -0.3873 -2.0627 32 1 3.1653 -2.6771 0.2788 33 1 3.2699 -3.0088 -2.1406 34 1 1.8162 -2.6060 -3.0855 35 1 0.7237 -4.4875 -2.0024 36 1 1.8760 -4.8143 -4.1175 37 1 3.3293 -5.2169 -3.1719 38 1 2.1132 -7.0963 -2.1045 39 1 0.6602 -6.6931 -3.0504 40 1 3.3364 -7.3290 -4.4147 41 1 0.3500 -7.2103 -5.2526 42 1 1.8094 -6.8258 -6.2642 43 1 2.5557 -9.1612 -6.2363 44 1 0.7950 -9.5161 -5.9625 45 1 2.7498 -9.6380 -3.8402 46 1 1.0141 -9.1939 -3.5416 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819145317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:13 Heat of formation + Delta-G solvation = -40.406972 kcal Electronic energy + Delta-G solvation = -20491.689292 eV Core-core repulsion = 17416.329140 eV Total energy + Delta-G solvation = -3075.360152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.33810 -38.20332 -36.11250 -35.01442 -32.49587 -31.50342 -29.14327 -27.08494 -26.14294 -25.89460 -24.43255 -23.03456 -21.84214 -21.10572 -20.11428 -19.69044 -16.59855 -16.38133 -16.04604 -15.64655 -15.31415 -15.25494 -14.78120 -14.34278 -14.19809 -13.95689 -13.55256 -13.17314 -13.03572 -12.78476 -12.53261 -12.44302 -11.94037 -11.82843 -11.52070 -11.34556 -11.22744 -11.07371 -10.89196 -10.86129 -10.72601 -10.64158 -10.47723 -10.39138 -10.25877 -9.93988 -9.51993 -9.07729 -8.47038 -8.41244 -7.17048 -6.00621 -4.01553 3.35980 3.39313 3.43183 3.89167 4.28210 4.31653 4.43003 4.46873 4.53467 4.76380 4.84672 4.97489 5.13482 5.20100 5.23639 5.32575 5.34363 5.39834 5.41445 5.41755 5.52179 5.55930 5.60429 5.62893 5.67810 5.72885 5.78743 5.93169 6.05486 6.08650 6.19684 6.22514 6.32377 6.43716 6.78748 6.90402 7.26636 7.29437 7.34794 7.82603 8.07834 8.18500 8.24349 8.58069 9.06263 9.62464 11.10292 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.061772 B = 0.002365 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.167581 B =11836.254582 C =11945.454363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.024 3.976 13 C 0.118 3.882 14 H 0.091 0.909 15 O -0.536 6.536 16 C 0.027 3.973 17 N -0.681 5.681 18 C 0.060 3.940 19 C -0.107 4.107 20 C -0.109 4.109 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.137 4.137 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.007 0.993 27 H 0.028 0.972 28 H -0.012 1.012 29 H 0.261 0.739 30 H 0.070 0.930 31 H 0.026 0.974 32 H 0.368 0.632 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.339 0.661 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 -22.528 -12.191 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.106 4.106 13 C 0.057 3.943 14 H 0.108 0.892 15 O -0.339 6.339 16 C -0.103 4.103 17 N -0.311 5.311 18 C -0.070 4.070 19 C -0.145 4.145 20 C -0.128 4.128 21 C -0.177 4.177 22 C -0.182 4.182 23 C -0.175 4.175 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.006 0.994 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.215 0.785 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.157 0.843 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.457 -22.860 -11.223 25.508 hybrid contribution -0.388 1.529 -1.008 1.872 sum -1.846 -21.331 -12.231 24.658 Atomic orbital electron populations 1.22246 0.89046 0.99568 1.00318 1.62015 1.06801 1.17358 1.39118 1.19743 0.95265 0.81641 0.96585 1.21138 1.34715 0.96853 1.01683 0.91819 1.25003 0.95345 0.97368 0.97056 1.69957 1.38479 1.11477 1.34144 0.86533 0.78677 0.78237 0.83797 1.20101 1.21415 1.20307 1.22729 1.00536 0.94001 0.93322 1.21849 0.98078 0.90726 0.83644 0.89162 1.86581 1.24887 1.84958 1.37497 1.22729 1.01120 0.88413 0.98055 1.60378 1.16276 1.10233 1.44254 1.21963 1.00262 0.93231 0.91499 1.21538 1.00361 0.94159 0.98411 1.22527 0.99769 0.95266 0.95270 1.23025 1.00118 0.96509 0.98028 1.22843 1.01636 0.96899 0.96808 1.22934 1.01717 0.96395 0.96441 0.93478 0.90683 0.97456 0.95379 0.99377 0.92927 0.91183 0.95601 0.78538 0.90698 0.94793 0.84308 0.95639 0.91257 0.90843 0.92084 0.89299 0.90203 0.91724 0.90355 0.91638 0.91600 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.07 0.55 1.29 16 2 N -0.53 -11.69 4.62 -244.37 -1.13 -12.82 16 3 C 0.19 5.12 4.72 -4.97 -0.02 5.10 16 4 C -0.51 -14.49 8.46 -34.44 -0.29 -14.78 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.02 0.42 4.62 -3.82 -0.02 0.41 16 13 C 0.12 1.73 3.02 -26.73 -0.08 1.65 16 14 H 0.09 1.36 6.55 -51.92 -0.34 1.02 16 15 O -0.54 -8.80 13.15 -35.23 -0.46 -9.26 16 16 C 0.03 0.32 5.32 -3.82 -0.02 0.30 16 17 N -0.68 -7.56 6.45 -113.78 -0.73 -8.29 16 18 C 0.06 0.55 5.68 -3.82 -0.02 0.53 16 19 C -0.11 -0.86 5.30 -26.73 -0.14 -1.00 16 20 C -0.11 -0.78 3.64 -89.81 -0.33 -1.10 16 21 C -0.14 -0.94 7.65 -25.83 -0.20 -1.14 16 22 C -0.14 -0.89 8.09 -25.83 -0.21 -1.10 16 23 C -0.14 -0.90 7.65 -25.92 -0.20 -1.10 16 24 H 0.05 0.83 6.47 -51.93 -0.34 0.50 16 25 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 28 H -0.01 -0.33 8.12 -51.92 -0.42 -0.75 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 31 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.37 5.12 9.04 45.56 0.41 5.54 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.34 3.59 8.73 -39.29 -0.34 3.25 16 36 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.54 7.92 -51.93 -0.41 0.13 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -31.10 365.64 -10.20 -41.30 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.02 Total: 2.44 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.08 Total: -9.51 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -1.13 Total: -47.44 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.46 Total: -9.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.10 -10.20 -41.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819145317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.892 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds