Wall clock time and date at job start Mon Mar 30 2020 00:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99744 * 2 1 4 4 C 1.50701 * 109.46817 * 293.95034 * 3 2 1 5 5 H 1.07998 * 120.00313 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99674 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00118 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99972 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47089 * 89.99955 * 8 6 4 10 10 H 1.48507 * 109.46903 * 210.00218 * 8 6 4 11 11 H 1.48498 * 109.46886 * 330.00037 * 8 6 4 12 12 C 1.46897 * 110.99846 * 123.95255 * 2 1 3 13 13 C 1.53007 * 109.47352 * 66.04767 * 12 2 1 14 14 H 1.08995 * 109.46853 * 304.99587 * 13 12 2 15 15 O 1.42901 * 109.46808 * 64.99730 * 13 12 2 16 16 C 1.52999 * 109.47011 * 184.99709 * 13 12 2 17 17 N 1.46906 * 109.46807 * 179.97438 * 16 13 12 18 18 C 1.46901 * 110.99793 * 179.97438 * 17 16 13 19 19 C 1.53000 * 109.46769 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47060 * 180.02562 * 19 18 17 21 21 C 1.53785 * 113.61570 * 274.13981 * 20 19 18 22 22 C 1.53956 * 87.02052 * 220.04627 * 21 20 19 23 23 C 1.53777 * 87.11087 * 25.36196 * 22 21 20 24 24 H 1.09000 * 109.47131 * 296.04636 * 1 2 3 25 25 H 1.08997 * 109.47362 * 56.04875 * 1 2 3 26 26 H 1.09008 * 109.46857 * 176.04658 * 1 2 3 27 27 H 1.08997 * 109.47128 * 53.95489 * 3 2 1 28 28 H 1.09006 * 109.46484 * 173.95562 * 3 2 1 29 29 H 0.97003 * 120.00065 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47418 * 306.04539 * 12 2 1 31 31 H 1.09004 * 109.46991 * 186.04443 * 12 2 1 32 32 H 0.96701 * 114.00165 * 60.00377 * 15 13 12 33 33 H 1.09006 * 109.47206 * 60.00545 * 16 13 12 34 34 H 1.08995 * 109.47212 * 299.99658 * 16 13 12 35 35 H 1.00899 * 110.99995 * 303.95597 * 17 16 13 36 36 H 1.09001 * 109.46874 * 60.00179 * 18 17 16 37 37 H 1.08992 * 109.47407 * 300.00197 * 18 17 16 38 38 H 1.09002 * 109.47398 * 300.00295 * 19 18 17 39 39 H 1.09001 * 109.47194 * 60.00475 * 19 18 17 40 40 H 1.09001 * 112.85054 * 45.33402 * 20 19 18 41 41 H 1.09000 * 113.61195 * 334.56762 * 21 20 19 42 42 H 1.09001 * 113.61520 * 105.46896 * 21 20 19 43 43 H 1.09005 * 113.53676 * 270.80967 * 22 21 20 44 44 H 1.08993 * 113.66514 * 139.93360 * 22 21 20 45 45 H 1.09011 * 113.61618 * 220.09268 * 23 22 21 46 46 H 1.09000 * 113.69499 * 89.19666 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 -1.2985 5 1 1.0739 1.5114 -2.0485 6 6 2.0276 3.3491 -1.5290 7 7 1.7143 3.9389 -2.6619 8 14 3.0019 4.2754 -0.2319 9 1 4.4541 4.0618 -0.4573 10 1 2.6946 5.7254 -0.3238 11 1 2.6314 3.7753 1.1163 12 6 1.9954 -0.7659 1.1376 13 6 1.6314 -2.2427 0.9704 14 1 0.5532 -2.3389 0.8434 15 8 2.2956 -2.7696 -0.1800 16 6 2.0700 -3.0199 2.2132 17 7 1.7200 -4.4376 2.0529 18 6 2.1275 -5.2167 3.2296 19 6 1.7467 -6.6845 3.0262 20 6 2.1706 -7.4960 4.2521 21 6 3.6289 -7.9807 4.1958 22 6 3.1274 -9.3058 4.7980 23 6 1.7563 -8.9754 4.1850 24 1 -0.3633 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0253 -0.0709 27 1 1.5610 1.9273 0.8309 28 1 3.0797 1.3443 0.1082 29 1 1.9889 4.8551 -2.8239 30 1 1.5611 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 3.2602 -2.7167 -0.1359 33 1 1.5633 -2.6179 3.0907 34 1 3.1482 -2.9236 2.3402 35 1 0.7340 -4.5481 1.8693 36 1 1.6220 -4.8298 4.1144 37 1 3.2062 -5.1360 3.3631 38 1 0.6678 -6.7649 2.8930 39 1 2.2519 -7.0717 2.1414 40 1 1.9076 -7.0112 5.1922 41 1 4.0169 -8.0809 3.1822 42 1 4.2988 -7.4269 4.8537 43 1 3.1272 -9.3161 5.8880 44 1 3.5978 -10.1887 4.3655 45 1 0.9165 -9.2236 4.8341 46 1 1.6299 -9.3477 3.1683 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819145318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:16 Heat of formation + Delta-G solvation = -35.494115 kcal Electronic energy + Delta-G solvation = -20542.213076 eV Core-core repulsion = 17467.065961 eV Total energy + Delta-G solvation = -3075.147115 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.34772 -38.30323 -36.22960 -35.10792 -32.45836 -31.54714 -29.36399 -27.63129 -26.20586 -25.92288 -24.43765 -22.93167 -21.85801 -21.01705 -20.10376 -19.71214 -16.93881 -16.63382 -15.90501 -15.82401 -15.38426 -15.17492 -14.93460 -14.38968 -14.17900 -14.00473 -13.77321 -13.35699 -12.80690 -12.77273 -12.65770 -12.37241 -12.27519 -12.05402 -11.67238 -11.54930 -11.25753 -11.17678 -10.96931 -10.89691 -10.76974 -10.52589 -10.46445 -10.43030 -10.26755 -9.99865 -9.49017 -9.20160 -8.55871 -8.52131 -7.32018 -6.03562 -4.00642 3.28134 3.35385 3.36765 3.83566 4.24981 4.31570 4.42314 4.43865 4.51300 4.66706 4.80121 4.94214 5.03284 5.12727 5.20043 5.25097 5.29769 5.33428 5.39378 5.42123 5.46151 5.51781 5.55316 5.57529 5.60772 5.64087 5.81991 5.90541 5.94945 5.98805 6.10937 6.20558 6.22225 6.33085 6.68879 6.85341 6.86403 6.99624 7.22790 7.59632 7.90977 8.01403 8.15577 8.67839 9.06218 9.57900 11.09587 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.048930 B = 0.002502 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.109601 B =11189.061477 C =11416.840097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.022 3.978 13 C 0.117 3.883 14 H 0.093 0.907 15 O -0.534 6.534 16 C 0.026 3.974 17 N -0.680 5.680 18 C 0.060 3.940 19 C -0.107 4.107 20 C -0.110 4.110 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.138 4.138 24 H 0.008 0.992 25 H 0.081 0.919 26 H 0.050 0.950 27 H -0.014 1.014 28 H 0.022 0.978 29 H 0.263 0.737 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.368 0.632 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.340 0.660 36 H 0.024 0.976 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -22.852 16.563 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.244 5.244 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.108 4.108 13 C 0.056 3.944 14 H 0.111 0.889 15 O -0.338 6.338 16 C -0.104 4.104 17 N -0.311 5.311 18 C -0.069 4.069 19 C -0.145 4.145 20 C -0.129 4.129 21 C -0.175 4.175 22 C -0.182 4.182 23 C -0.175 4.175 24 H 0.027 0.973 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.004 0.996 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.214 0.786 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.158 0.842 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.414 -23.150 15.477 27.883 hybrid contribution 0.182 1.549 2.388 2.852 sum 1.596 -21.601 17.865 28.077 Atomic orbital electron populations 1.22297 0.88365 0.99993 1.00698 1.61846 1.07276 1.16019 1.39229 1.20198 0.94796 0.84190 0.97263 1.21044 1.35516 0.97153 1.00854 0.90024 1.24914 0.95872 0.97375 0.95295 1.69895 1.46935 1.13251 1.23835 0.86863 0.80921 0.79282 0.82664 1.20141 1.21203 1.19433 1.22792 1.00507 0.94359 0.93160 1.21863 0.97677 0.90337 0.84501 0.88886 1.86607 1.22879 1.83867 1.40420 1.22718 1.01462 0.88354 0.97831 1.60341 1.23576 1.08574 1.38570 1.21962 1.00792 0.93258 0.90913 1.21545 1.01159 0.94041 0.97752 1.22526 0.96596 0.95038 0.98760 1.23017 0.96248 0.96751 1.01472 1.22846 0.97170 0.97931 1.00285 1.22936 0.97160 0.96069 1.01349 0.97326 0.90042 0.93171 0.99613 0.95971 0.92685 0.95493 0.91115 0.78576 0.94824 0.90768 0.84172 0.95803 0.91168 0.92056 0.90808 0.89562 0.89894 0.91715 0.90430 0.91570 0.91737 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.14 60.06 0.55 1.24 16 2 N -0.52 -11.09 4.70 -244.36 -1.15 -12.24 16 3 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 4 C -0.51 -14.67 9.01 -34.44 -0.31 -14.98 16 5 H 0.08 2.58 7.37 -52.49 -0.39 2.19 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 8 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 12 C 0.02 0.36 4.59 -3.82 -0.02 0.34 16 13 C 0.12 1.64 3.13 -26.73 -0.08 1.56 16 14 H 0.09 1.36 6.34 -51.93 -0.33 1.03 16 15 O -0.53 -8.49 13.15 -35.23 -0.46 -8.95 16 16 C 0.03 0.30 5.35 -3.82 -0.02 0.28 16 17 N -0.68 -7.24 6.37 -113.78 -0.72 -7.97 16 18 C 0.06 0.53 5.68 -3.82 -0.02 0.51 16 19 C -0.11 -0.84 5.30 -26.73 -0.14 -0.98 16 20 C -0.11 -0.76 3.64 -89.81 -0.33 -1.08 16 21 C -0.14 -0.92 7.65 -25.82 -0.20 -1.12 16 22 C -0.14 -0.88 8.09 -25.83 -0.21 -1.09 16 23 C -0.14 -0.88 7.65 -25.92 -0.20 -1.08 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 25 H 0.08 1.79 6.76 -51.93 -0.35 1.44 16 26 H 0.05 0.86 6.37 -51.92 -0.33 0.53 16 27 H -0.01 -0.34 7.18 -51.93 -0.37 -0.72 16 28 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 32 H 0.37 4.86 9.05 45.56 0.41 5.27 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.34 3.49 8.73 -39.29 -0.34 3.15 16 36 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.64 7.88 -51.93 -0.41 0.23 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.58 7.92 -51.93 -0.41 0.17 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 46 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -31.69 361.85 -9.85 -41.54 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.97 Total: 2.83 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -1.09 Total: -10.58 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -1.10 Total: -47.29 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.46 Total: -8.95 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.69 -9.85 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819145318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.048 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds