Wall clock time and date at job start Mon Mar 30 2020 00:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99961 * 2 1 4 4 H 1.48502 * 109.46725 * 274.43275 * 3 2 1 5 5 H 1.48489 * 109.47222 * 34.43656 * 3 2 1 6 6 H 1.48503 * 109.47238 * 154.44026 * 3 2 1 7 7 C 1.38811 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00298 * 164.42016 * 7 2 1 9 9 N 1.36936 * 120.00008 * 344.42495 * 7 2 1 10 10 C 1.47079 * 121.00437 * 155.93030 * 9 7 2 11 11 C 1.53257 * 109.23186 * 116.38407 * 10 9 7 12 12 N 1.46557 * 109.24381 * 45.95827 * 11 10 9 13 13 N 1.39743 * 127.33035 * 161.57596 * 12 11 10 14 14 C 1.31022 * 108.19057 * 179.44945 * 13 12 11 15 15 C 1.40120 * 108.26244 * 0.16605 * 14 13 12 16 16 Br 1.89098 * 126.12834 * 180.02562 * 15 14 13 17 17 C 1.34685 * 107.73774 * 0.05197 * 15 14 13 18 18 C 1.47495 * 121.01216 * 335.90695 * 9 7 2 19 19 H 0.96993 * 120.00052 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.51558 * 356.44797 * 10 9 7 21 21 H 1.09002 * 109.49829 * 236.30654 * 10 9 7 22 22 H 1.09003 * 109.50459 * 286.03245 * 11 10 9 23 23 H 1.08997 * 109.50881 * 165.88913 * 11 10 9 24 24 H 1.07994 * 125.86297 * 180.16006 * 14 13 12 25 25 H 1.08994 * 109.95211 * 103.59631 * 18 9 7 26 26 H 1.08997 * 109.94848 * 342.33300 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4039 2.1005 -1.3959 5 1 1.4977 2.6238 0.7917 6 1 3.5915 1.4150 0.6041 7 6 2.0102 -1.2021 0.0005 8 1 3.0605 -1.2195 -0.2507 9 7 1.3632 -2.3661 0.3195 10 6 1.8643 -3.6655 -0.1536 11 6 2.2748 -4.5176 1.0523 12 7 1.2264 -4.4459 2.0738 13 7 1.0241 -5.3220 3.1435 14 6 -0.0103 -4.9000 3.8280 15 6 -0.5018 -3.7416 3.2114 16 35 -1.9854 -2.7181 3.7832 17 6 0.2717 -3.4883 2.1383 18 6 0.1432 -2.3549 1.1482 19 1 -0.4850 0.8400 0.0004 20 1 2.7279 -3.5093 -0.8000 21 1 1.0794 -4.1772 -0.7107 22 1 3.2105 -4.1391 1.4638 23 1 2.4069 -5.5530 0.7383 24 1 -0.4147 -5.3651 4.7148 25 1 -0.7344 -2.5075 0.5201 26 1 0.0622 -1.4058 1.6780 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852622752.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:09 Heat of formation + Delta-G solvation = 87.965862 kcal Electronic energy + Delta-G solvation = -13701.772252 eV Core-core repulsion = 11249.501953 eV Total energy + Delta-G solvation = -2452.270299 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.002 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.41568 -37.99156 -34.87323 -33.33995 -31.98640 -31.46704 -28.88743 -27.40296 -25.28856 -23.47687 -21.99139 -20.14546 -18.56494 -17.88245 -16.87698 -16.50415 -15.56095 -15.44431 -15.14290 -14.87672 -14.34140 -13.68871 -13.37084 -13.24260 -12.76610 -12.72270 -12.38498 -12.11185 -11.99217 -11.97321 -11.71434 -10.96782 -10.77149 -10.19358 -9.34917 -8.96730 -7.97114 -5.41958 0.74299 0.78858 1.47853 1.51197 1.56817 1.59166 1.68926 2.46389 3.20180 3.40073 3.60522 3.72455 4.14988 4.19529 4.31047 4.50984 4.71054 4.78370 4.87244 5.07221 5.29992 5.44648 5.59831 5.92775 6.20943 6.60122 6.98044 7.64847 8.16626 9.12966 Molecular weight = 271.00amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.009059 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.657932 B = 3090.126321 C = 4148.802632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.042 4.042 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.272 4.272 8 H 0.082 0.918 9 N -0.615 5.615 10 C 0.126 3.874 11 C 0.116 3.884 12 N -0.361 5.361 13 N -0.315 5.315 14 C 0.079 3.921 15 C -0.264 4.264 16 Br -0.019 7.019 17 C 0.108 3.892 18 C 0.245 3.755 19 H 0.255 0.745 20 H 0.105 0.895 21 H 0.039 0.961 22 H 0.083 0.917 23 H 0.117 0.883 24 H 0.222 0.778 25 H 0.037 0.963 26 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -7.685 6.026 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.796 3.204 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.401 4.401 8 H 0.099 0.901 9 N -0.339 5.339 10 C -0.001 4.001 11 C -0.006 4.006 12 N -0.143 5.143 13 N -0.135 5.135 14 C -0.109 4.109 15 C -0.355 4.355 16 Br 0.063 6.937 17 C -0.025 4.025 18 C 0.118 3.882 19 H 0.064 0.936 20 H 0.123 0.877 21 H 0.057 0.943 22 H 0.102 0.898 23 H 0.135 0.865 24 H 0.238 0.762 25 H 0.054 0.946 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.800 -8.102 5.990 10.107 hybrid contribution -0.180 1.376 -0.127 1.393 sum -0.980 -6.726 5.864 8.977 Atomic orbital electron populations 1.70089 1.06476 1.26443 1.54564 1.25764 0.96143 1.01444 1.00480 0.85258 0.78117 0.79527 0.77509 1.20927 1.21985 1.19543 1.19509 0.92980 0.84878 1.42714 0.90073 1.44438 1.29199 1.02665 1.57573 1.21480 0.99960 0.85544 0.93133 1.22672 0.87894 1.03289 0.86772 1.48749 1.23999 1.19085 1.22448 1.77198 1.20133 1.16277 0.99877 1.24297 0.93039 0.93401 1.00156 1.21414 1.04907 1.05049 1.04160 1.96497 1.37178 1.70679 1.89299 1.22274 0.89751 0.93302 0.97208 1.19464 0.88892 0.91805 0.88015 0.93565 0.87697 0.94271 0.89830 0.86520 0.76210 0.94557 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.08 11.07 21.65 0.24 -51.84 15 2 C -0.04 -2.22 5.00 84.86 0.42 -1.79 15 3 Si 0.97 42.80 29.58 68.60 2.03 44.83 15 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 15 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 7 C -0.27 -13.92 9.66 84.03 0.81 -13.11 15 8 H 0.08 3.94 7.88 -2.91 -0.02 3.92 15 9 N -0.62 -29.16 3.01 -701.17 -2.11 -31.27 15 10 C 0.13 4.59 6.49 86.35 0.56 5.15 15 11 C 0.12 3.73 7.45 86.45 0.64 4.38 15 12 N -0.36 -13.77 4.03 -333.94 -1.35 -15.11 15 13 N -0.31 -11.24 12.61 -56.76 -0.72 -11.95 15 14 C 0.08 2.54 12.02 85.27 1.02 3.57 15 15 C -0.26 -9.79 6.52 21.91 0.14 -9.65 15 16 Br -0.02 -0.64 33.89 -20.37 -0.69 -1.33 15 17 C 0.11 4.51 6.71 41.31 0.28 4.79 15 18 C 0.25 11.73 5.13 85.55 0.44 12.17 15 19 H 0.26 13.89 8.31 -92.71 -0.77 13.12 15 20 H 0.10 3.40 7.94 -2.39 -0.02 3.38 15 21 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.08 2.62 8.14 -2.39 -0.02 2.60 15 23 H 0.12 2.97 8.14 -2.39 -0.02 2.95 15 24 H 0.22 5.13 8.06 -2.91 -0.02 5.11 15 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.08 4.53 6.46 -2.39 -0.02 4.51 15 Total: -1.00 -60.09 245.72 2.92 -57.17 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.19 Total: 4.01 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 4.32 Total: 5.50 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -3.93 Total: -110.19 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -0.69 Total: -1.33 kcal Total: -60.09 2.92 -57.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852622752.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.139 kcal (2) G-P(sol) polarization free energy of solvation -60.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds