Wall clock time and date at job start Mon Mar 30 2020 01:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00377 * 2 1 4 4 O 1.20823 * 119.99744 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.50701 * 109.46849 * 180.02562 * 5 3 2 7 7 C 1.38380 * 120.84526 * 269.97508 * 6 5 3 8 8 Cl 1.73598 * 120.42015 * 0.02562 * 7 6 5 9 9 N 1.32637 * 119.16495 * 180.02562 * 7 6 5 10 10 C 1.31829 * 120.99722 * 0.02562 * 9 7 6 11 11 N 1.31698 * 121.86436 * 359.71506 * 10 9 7 12 12 C 1.33111 * 120.71894 * 0.57370 * 11 10 9 13 13 N 1.38533 * 120.52853 * 179.71316 * 12 11 10 14 14 C 1.36943 * 119.99830 * 359.44674 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27483 * 14 13 12 16 16 C 1.38847 * 119.99896 * 180.27536 * 14 13 12 17 17 N 1.31534 * 119.99867 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99956 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47159 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47290 * 120.00063 * 18 16 14 21 21 H 1.48503 * 109.47163 * 240.00068 * 18 16 14 22 22 H 1.08994 * 109.47598 * 180.02562 * 1 2 3 23 23 H 1.09011 * 109.46567 * 299.99875 * 1 2 3 24 24 H 1.09003 * 109.47310 * 59.98996 * 1 2 3 25 25 H 1.08999 * 109.47312 * 60.00298 * 5 3 2 26 26 H 1.08998 * 109.47358 * 300.00297 * 5 3 2 27 27 H 1.08003 * 119.06501 * 179.97438 * 10 9 7 28 28 H 0.97001 * 120.00307 * 179.72847 * 13 12 11 29 29 H 0.97004 * 120.00307 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 3.9937 2.7199 0.0002 7 6 4.1948 3.4009 -1.1875 8 17 3.9576 2.6015 -2.7102 9 7 4.5713 4.6721 -1.1480 10 6 4.7553 5.2902 0.0018 11 7 4.5705 4.6822 1.1553 12 6 4.1982 3.4050 1.1989 13 7 4.0106 2.7677 2.4145 14 6 4.2193 3.4489 3.5840 15 1 4.5258 4.4842 3.5586 16 6 4.0369 2.8085 4.8024 17 7 3.6641 1.5475 4.8333 18 14 4.3209 3.7378 6.3977 19 1 4.7308 5.1319 6.0922 20 1 3.0658 3.7541 7.1914 21 1 5.3912 3.0663 7.1780 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5140 -0.8899 25 1 3.9557 0.7808 -0.8908 26 1 3.9564 0.7804 0.8891 27 1 5.0623 6.3257 -0.0024 28 1 3.7354 1.8378 2.4373 29 1 3.5362 1.1001 5.6845 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534329.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:06 Heat of formation + Delta-G solvation = -61.476153 kcal Electronic energy + Delta-G solvation = -18543.606413 eV Core-core repulsion = 15299.283507 eV Total energy + Delta-G solvation = -3244.322905 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.051 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.96420 -41.10747 -37.99127 -37.67459 -37.37984 -34.75271 -34.17582 -32.33573 -29.88573 -27.96605 -27.13990 -24.39847 -23.88227 -21.89899 -20.39439 -19.22356 -18.73766 -18.14814 -17.62639 -17.39190 -16.61699 -16.18714 -15.84207 -15.35139 -15.26919 -14.70853 -14.54921 -14.41863 -13.81131 -13.57513 -13.30253 -13.00430 -12.97109 -12.56353 -12.42847 -12.31737 -12.08141 -11.81024 -11.63679 -11.44113 -11.06009 -10.46350 -9.94114 -9.38198 -8.64778 -5.94262 0.10677 0.49496 0.74438 1.15564 1.42565 1.46629 1.56811 1.80313 2.20005 2.78407 2.81727 3.27205 3.48361 3.75166 3.82972 4.01730 4.15827 4.24702 4.30013 4.30708 4.64767 4.69978 4.77977 5.24991 5.32800 5.45385 5.76382 6.18697 6.64672 6.72091 7.11281 7.17771 7.68903 8.51477 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.007354 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.899111 B = 3806.688508 C = 5116.130782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.530 6.530 5 C -0.049 4.049 6 C -0.275 4.275 7 C 0.260 3.740 8 Cl -0.024 7.024 9 N -0.613 5.613 10 C 0.352 3.648 11 N -0.601 5.601 12 C 0.380 3.620 13 N -0.515 5.515 14 C -0.313 4.313 15 H 0.110 0.890 16 C -0.015 4.015 17 N -0.911 5.911 18 Si 1.003 2.997 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.270 1.270 22 H 0.138 0.862 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.140 0.860 26 H 0.113 0.887 27 H 0.225 0.775 28 H 0.405 0.595 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 -3.636 -7.620 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.306 3.694 4 O -0.419 6.419 5 C -0.087 4.087 6 C -0.291 4.291 7 C 0.093 3.907 8 Cl 0.004 6.996 9 N -0.341 5.341 10 C 0.061 3.939 11 N -0.329 5.329 12 C 0.131 3.869 13 N -0.121 5.121 14 C -0.444 4.444 15 H 0.127 0.873 16 C -0.217 4.217 17 N -0.548 5.548 18 Si 0.826 3.174 19 H -0.185 1.185 20 H -0.201 1.201 21 H -0.195 1.195 22 H 0.156 0.844 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.158 0.842 26 H 0.131 0.869 27 H 0.241 0.759 28 H 0.242 0.758 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.469 -2.666 -7.270 7.882 hybrid contribution -0.645 -0.886 0.650 1.274 sum -2.114 -3.552 -6.620 7.805 Atomic orbital electron populations 1.23540 0.75029 1.05791 1.02137 1.86485 1.24879 1.32379 1.83918 1.24046 0.92448 0.81339 0.71525 1.90652 1.67689 1.37563 1.45979 1.19917 0.87302 0.93926 1.07591 1.19511 1.19843 0.98053 0.91712 1.21355 0.92720 0.90444 0.86170 1.98341 1.94572 1.77021 1.29662 1.67749 1.26040 1.08788 1.31496 1.25037 0.88170 1.00134 0.80525 1.67936 1.24391 1.09346 1.31246 1.18238 0.93843 0.89185 0.85670 1.40984 1.56483 1.12579 1.02092 1.20206 1.43386 0.98065 0.82737 0.87264 1.26293 0.95800 0.96732 1.02872 1.69716 1.44530 1.11225 1.29362 0.84696 0.78133 0.78500 0.76087 1.18503 1.20134 1.19547 0.84399 0.93131 0.91703 0.84180 0.86917 0.75912 0.75825 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 15 2 O -0.36 -11.06 10.56 -51.41 -0.54 -11.60 15 3 C 0.46 16.84 7.95 71.23 0.57 17.40 15 4 O -0.53 -22.98 15.78 21.97 0.35 -22.64 15 5 C -0.05 -1.66 5.20 29.10 0.15 -1.50 15 6 C -0.28 -11.12 4.43 -19.51 -0.09 -11.20 15 7 C 0.26 10.05 7.32 84.61 0.62 10.67 15 8 Cl -0.02 -0.76 27.63 -2.72 -0.08 -0.84 15 9 N -0.61 -23.97 10.43 -191.08 -1.99 -25.96 15 10 C 0.35 13.46 12.28 180.90 2.22 15.68 15 11 N -0.60 -27.14 9.25 -197.59 -1.83 -28.97 15 12 C 0.38 17.57 7.45 133.12 0.99 18.56 15 13 N -0.51 -25.28 5.34 -188.69 -1.01 -26.29 15 14 C -0.31 -16.14 9.72 84.04 0.82 -15.32 15 15 H 0.11 5.73 7.11 -2.91 -0.02 5.71 15 16 C -0.01 -0.73 5.50 84.88 0.47 -0.26 15 17 N -0.91 -46.34 13.05 21.65 0.28 -46.06 15 18 Si 1.00 39.52 29.55 68.60 2.03 41.55 15 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 20 H -0.28 -10.68 7.11 99.48 0.71 -9.98 15 21 H -0.27 -10.25 7.11 99.48 0.71 -9.55 15 22 H 0.14 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.05 1.34 8.14 -2.38 -0.02 1.32 15 24 H 0.06 1.49 8.13 -2.39 -0.02 1.48 15 25 H 0.14 3.85 7.02 -2.39 -0.02 3.83 15 26 H 0.11 3.74 6.67 -2.39 -0.02 3.72 15 27 H 0.22 6.42 8.06 -2.91 -0.02 6.40 15 28 H 0.40 19.60 6.02 -92.71 -0.56 19.04 15 29 H 0.28 13.44 8.31 -92.71 -0.77 12.67 15 Total: -1.00 -62.34 280.94 4.81 -57.52 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.66 Total: 27.38 kcal Atomic # 6 Polarization: 28.95 SS G_CDS: 6.94 Total: 35.89 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -4.54 Total: -127.28 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.20 Total: -34.24 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -62.34 4.81 -57.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534329.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.952 kcal (2) G-P(sol) polarization free energy of solvation -62.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds