Wall clock time and date at job start Mon Mar 30 2020 01:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76203 * 102.99805 * 2 1 4 4 C 1.38755 * 120.04053 * 359.71975 * 3 2 1 5 5 C 1.38876 * 119.85348 * 179.79212 * 4 3 2 6 6 N 1.39502 * 120.02932 * 180.23266 * 5 4 3 7 7 C 1.34767 * 120.00177 * 33.60037 * 6 5 4 8 8 O 1.21758 * 119.99928 * 5.27270 * 7 6 5 9 9 C 1.41835 * 120.00112 * 185.27352 * 7 6 5 10 10 H 1.07996 * 120.00015 * 0.02562 * 9 7 6 11 11 C 1.40130 * 119.99814 * 179.97438 * 9 7 6 12 12 N 1.30633 * 120.00593 * 0.02562 * 11 9 7 13 13 Si 1.86808 * 119.99641 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46863 * 60.00198 * 13 11 9 15 15 H 1.48499 * 109.46931 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47278 * 300.00410 * 13 11 9 17 17 C 1.39169 * 119.93298 * 0.49166 * 5 4 3 18 18 C 1.38107 * 120.08518 * 359.76575 * 17 5 4 19 19 C 1.38295 * 120.14636 * 359.97438 * 18 17 5 20 20 Cl 1.73596 * 119.97062 * 180.02562 * 19 18 17 21 21 H 1.09005 * 109.47149 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47222 * 60.00015 * 1 2 3 23 23 H 1.09005 * 109.47443 * 299.99952 * 1 2 3 24 24 H 1.07996 * 120.07354 * 0.02562 * 4 3 2 25 25 H 0.96999 * 119.99529 * 213.59690 * 6 5 4 26 26 H 0.96993 * 120.00357 * 179.97438 * 12 11 9 27 27 H 1.08003 * 119.95345 * 179.74139 * 17 5 4 28 28 H 1.07998 * 119.93034 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1962 2.6639 -0.0059 5 6 1.5129 4.0160 -0.0015 6 7 0.4962 4.9712 -0.0025 7 6 -0.6626 4.7226 0.6390 8 8 -0.7874 3.7071 1.2991 9 6 -1.7370 5.6438 0.5451 10 1 -1.6266 6.5443 -0.0407 11 6 -2.9421 5.3849 1.2117 12 7 -3.0760 4.2954 1.9199 13 14 -4.3574 6.5979 1.0875 14 1 -4.7586 6.7464 -0.3346 15 1 -5.5101 6.0962 1.8778 16 1 -3.9282 7.9156 1.6208 17 6 2.8455 4.4171 -0.0016 18 6 3.8529 3.4723 -0.0011 19 6 3.5413 2.1249 0.0000 20 17 4.8111 0.9412 0.0012 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 0.5138 0.8900 24 1 0.1628 2.3501 -0.0100 25 1 0.6234 5.8144 -0.4648 26 1 -3.9100 4.1165 2.3816 27 1 3.0923 5.4685 -0.0024 28 1 4.8862 3.7863 -0.0016 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161855537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:50 Heat of formation + Delta-G solvation = -43.633899 kcal Electronic energy + Delta-G solvation = -15949.443939 eV Core-core repulsion = 13116.354852 eV Total energy + Delta-G solvation = -2833.089087 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 271.017 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93105 -38.98270 -37.35188 -35.29855 -34.49486 -32.36423 -30.69215 -29.75686 -28.29839 -24.24802 -23.80774 -21.79104 -19.62085 -18.80750 -17.72229 -17.46062 -16.83134 -16.39180 -15.86290 -15.23914 -15.11400 -14.92816 -14.57649 -14.47631 -14.14950 -13.54177 -13.41882 -13.13935 -12.88073 -12.73676 -12.62965 -12.39822 -12.09071 -12.00311 -11.32790 -11.12338 -10.92979 -10.48544 -9.93492 -8.91159 -8.44379 -8.38808 -7.04992 0.09531 0.29586 0.50366 1.15260 1.38820 1.40052 1.41381 1.53728 2.18693 2.28624 2.65107 2.91388 3.60820 3.83577 4.13778 4.16620 4.25273 4.37174 4.44918 4.75132 4.81913 4.92505 5.16098 5.19493 5.36275 5.56550 5.84704 6.12280 6.28489 6.71349 7.33843 8.33834 8.52411 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.005205 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.415986 B = 5378.032047 C = 6146.878016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.095 6.095 3 C -0.074 4.074 4 C -0.159 4.159 5 C 0.187 3.813 6 N -0.693 5.693 7 C 0.529 3.471 8 O -0.610 6.610 9 C -0.563 4.563 10 H 0.092 0.908 11 C 0.034 3.966 12 N -0.798 5.798 13 Si 0.998 3.002 14 H -0.254 1.254 15 H -0.274 1.274 16 H -0.253 1.253 17 C -0.157 4.157 18 C -0.061 4.061 19 C -0.070 4.070 20 Cl -0.057 7.057 21 H 0.135 0.865 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.119 0.881 25 H 0.410 0.590 26 H 0.279 0.721 27 H 0.162 0.838 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.140 -1.238 -5.447 10.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.147 5.853 3 C -0.188 4.188 4 C -0.186 4.186 5 C 0.086 3.914 6 N -0.337 5.337 7 C 0.338 3.662 8 O -0.497 6.497 9 C -0.598 4.598 10 H 0.110 0.890 11 C -0.185 4.185 12 N -0.426 5.426 13 Si 0.817 3.183 14 H -0.178 1.178 15 H -0.199 1.199 16 H -0.177 1.177 17 C -0.181 4.181 18 C -0.081 4.081 19 C -0.104 4.104 20 Cl -0.028 7.028 21 H 0.153 0.847 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.137 0.863 25 H 0.246 0.754 26 H 0.089 0.911 27 H 0.180 0.820 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 9.590 -3.201 -4.867 11.221 hybrid contribution -1.575 1.689 -0.006 2.310 sum 8.014 -1.512 -4.873 9.501 Atomic orbital electron populations 1.23692 0.94212 1.07815 1.05142 1.84989 1.06970 1.01257 1.92093 1.21628 0.94634 0.97998 1.04557 1.21163 0.98639 0.92636 1.06132 1.18176 0.89575 0.89107 0.94546 1.43819 1.14988 1.18985 1.55896 1.17423 0.81933 0.87541 0.79267 1.90615 1.82158 1.31299 1.45648 1.20574 0.97863 1.08472 1.32900 0.88995 1.26973 1.02442 0.97118 0.91941 1.70137 1.26406 1.24465 1.21561 0.85046 0.75459 0.77999 0.79758 1.17756 1.19877 1.17715 1.21207 0.89280 1.01483 1.06104 1.21030 1.01075 0.88912 0.97082 1.20397 0.86836 0.91180 1.11975 1.98319 1.49796 1.57560 1.97137 0.84723 0.90427 0.91632 0.86287 0.75376 0.91072 0.82009 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.15 113.37 1.04 -3.52 15 2 S -0.10 -3.17 21.46 -56.49 -1.21 -4.39 15 3 C -0.07 -2.79 6.11 22.63 0.14 -2.65 15 4 C -0.16 -6.89 7.96 22.55 0.18 -6.71 15 5 C 0.19 7.56 6.27 38.30 0.24 7.80 15 6 N -0.69 -30.00 5.31 -311.44 -1.65 -31.65 15 7 C 0.53 28.88 7.30 85.13 0.62 29.50 15 8 O -0.61 -38.16 12.57 -4.54 -0.06 -38.21 15 9 C -0.56 -29.73 9.32 23.62 0.22 -29.51 15 10 H 0.09 4.27 7.85 -2.91 -0.02 4.25 15 11 C 0.03 1.77 5.50 85.33 0.47 2.24 15 12 N -0.80 -45.71 11.73 21.85 0.26 -45.45 15 13 Si 1.00 38.04 29.56 68.60 2.03 40.06 15 14 H -0.25 -9.11 7.11 99.48 0.71 -8.40 15 15 H -0.27 -10.14 7.11 99.48 0.71 -9.44 15 16 H -0.25 -9.09 7.11 99.48 0.71 -8.38 15 17 C -0.16 -4.85 9.96 22.46 0.22 -4.62 15 18 C -0.06 -1.70 9.81 22.25 0.22 -1.48 15 19 C -0.07 -2.27 6.34 22.52 0.14 -2.12 15 20 Cl -0.06 -1.59 27.83 -2.72 -0.08 -1.67 15 21 H 0.13 3.38 8.14 -2.39 -0.02 3.36 15 22 H 0.08 2.58 7.73 -2.39 -0.02 2.56 15 23 H 0.06 2.54 7.76 -2.39 -0.02 2.53 15 24 H 0.12 5.93 4.24 -2.91 -0.01 5.92 15 25 H 0.41 14.57 8.77 -92.71 -0.81 13.76 15 26 H 0.28 14.49 8.29 -92.71 -0.77 13.72 15 27 H 0.16 3.84 8.06 -2.91 -0.02 3.82 15 28 H 0.17 3.41 8.06 -2.91 -0.02 3.38 15 Total: -1.00 -68.48 276.42 3.18 -65.30 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.40 Total: 27.07 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.49 Total: -11.07 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -1.40 Total: -77.11 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.06 Total: -38.21 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.06 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -1.21 Total: -4.39 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -68.48 3.18 -65.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161855537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.671 kcal (2) G-P(sol) polarization free energy of solvation -68.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds