Wall clock time and date at job start Mon Mar 30 2020 01:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34777 * 116.99833 * 2 1 4 4 O 1.21533 * 119.99911 * 359.97438 * 3 2 1 5 5 C 1.47264 * 119.99992 * 180.27181 * 3 2 1 6 6 C 1.39883 * 120.99107 * 269.72249 * 5 3 2 7 7 C 1.50701 * 120.49550 * 359.97438 * 6 5 3 8 8 N 1.32137 * 119.01040 * 179.97438 * 6 5 3 9 9 C 1.32163 * 121.19572 * 359.97438 * 8 6 5 10 10 Cl 1.73599 * 118.89129 * 180.02562 * 9 8 6 11 11 N 1.31788 * 122.21899 * 0.02562 * 9 8 6 12 12 C 1.33000 * 120.83187 * 359.72634 * 11 9 8 13 13 N 1.37914 * 120.63625 * 180.28105 * 12 11 9 14 14 C 1.36910 * 120.00124 * 0.24679 * 13 12 11 15 15 H 1.08001 * 119.99678 * 359.97438 * 14 13 12 16 16 C 1.38901 * 120.00015 * 179.97438 * 14 13 12 17 17 N 1.31484 * 120.00373 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00157 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47532 * 89.99727 * 18 16 14 20 20 H 1.48500 * 109.47465 * 209.99830 * 18 16 14 21 21 H 1.48500 * 109.47083 * 329.99816 * 18 16 14 22 22 H 1.08992 * 109.47440 * 300.00087 * 1 2 3 23 23 H 1.09004 * 109.46770 * 60.00898 * 1 2 3 24 24 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47379 * 89.99901 * 7 6 5 26 26 H 1.08998 * 109.47453 * 210.00087 * 7 6 5 27 27 H 1.08999 * 109.47221 * 330.00008 * 7 6 5 28 28 H 0.96999 * 120.00084 * 180.24096 * 13 12 11 29 29 H 0.96994 * 120.00809 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5345 1.2780 -0.0061 6 6 4.2585 1.3189 1.1901 7 6 3.5453 1.2854 2.5173 8 7 5.5771 1.3875 1.1390 9 6 6.2167 1.4171 -0.0171 10 17 7.9504 1.5068 -0.0144 11 7 5.5828 1.3810 -1.1720 12 6 4.2558 1.3068 -1.2191 13 7 3.5968 1.2633 -2.4299 14 6 4.3095 1.2915 -3.5985 15 1 5.3877 1.3481 -3.5722 16 6 3.6459 1.2472 -4.8179 17 7 2.3333 1.1778 -4.8500 18 14 4.6182 1.2863 -6.4124 19 1 4.9497 -0.1014 -6.8243 20 1 3.8058 1.9363 -7.4719 21 1 5.8723 2.0550 -6.2087 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 3.4268 0.2511 2.8400 26 1 4.1293 1.8323 3.2575 27 1 2.5640 1.7485 2.4142 28 1 2.6285 1.2128 -2.4535 29 1 1.8698 1.1465 -5.7015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:41 Heat of formation + Delta-G solvation = -64.519230 kcal Electronic energy + Delta-G solvation = -18509.546739 eV Core-core repulsion = 15265.091876 eV Total energy + Delta-G solvation = -3244.454863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.13512 -40.87643 -38.17792 -37.67497 -37.45132 -35.06824 -34.20710 -32.05402 -29.87986 -28.56616 -26.91218 -25.71018 -23.08285 -22.47981 -20.58675 -19.03772 -18.95539 -18.29088 -18.02547 -17.03751 -16.70791 -16.28720 -16.16635 -15.55976 -14.93143 -14.37947 -14.25126 -13.99227 -13.81037 -13.69947 -13.27209 -13.17907 -12.85292 -12.77841 -12.48414 -12.37247 -12.18526 -12.13535 -11.82748 -11.44571 -11.22450 -10.60385 -10.13236 -9.60216 -8.79215 -6.10518 -0.21210 0.40027 0.46885 0.92316 1.38621 1.45168 1.53291 1.78511 2.11286 2.56932 2.61058 3.04421 3.29727 3.74705 3.93630 4.10790 4.29212 4.31222 4.36345 4.67099 4.68388 4.74570 4.87133 5.15819 5.18027 5.26662 5.55143 6.00751 6.46875 6.60446 6.90156 6.94435 7.37942 8.35946 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.008886 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.625797 B = 3150.143557 C = 5164.100536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.358 6.358 3 C 0.548 3.452 4 O -0.526 6.526 5 C -0.356 4.356 6 C 0.265 3.735 7 C -0.100 4.100 8 N -0.594 5.594 9 C 0.415 3.585 10 Cl 0.024 6.976 11 N -0.583 5.583 12 C 0.385 3.615 13 N -0.496 5.496 14 C -0.320 4.320 15 H 0.117 0.883 16 C -0.010 4.010 17 N -0.901 5.901 18 Si 1.011 2.989 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.260 1.260 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.135 0.865 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.404 0.596 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -2.898 8.301 8.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.274 6.274 3 C 0.391 3.609 4 O -0.415 6.415 5 C -0.373 4.373 6 C 0.123 3.877 7 C -0.157 4.157 8 N -0.323 5.323 9 C 0.118 3.882 10 Cl 0.052 6.948 11 N -0.314 5.314 12 C 0.135 3.865 13 N -0.098 5.098 14 C -0.451 4.451 15 H 0.135 0.865 16 C -0.214 4.214 17 N -0.536 5.536 18 Si 0.832 3.168 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.184 1.184 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.153 0.847 25 H 0.129 0.871 26 H 0.124 0.876 27 H 0.093 0.907 28 H 0.240 0.760 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.518 -2.566 7.760 8.190 hybrid contribution -1.075 0.110 -1.072 1.522 sum -0.557 -2.456 6.689 7.147 Atomic orbital electron populations 1.23652 0.74499 1.05990 1.02780 1.86713 1.25280 1.32064 1.83349 1.20617 0.88094 0.81488 0.70676 1.90796 1.67350 1.37000 1.46378 1.19501 0.91023 1.31315 0.95424 1.21690 0.87820 0.83727 0.94503 1.20903 0.99077 1.05433 0.90303 1.67747 1.08748 1.28766 1.27086 1.22778 0.89479 0.91013 0.84963 1.98364 1.02232 1.95789 1.98429 1.67175 1.07920 1.27000 1.29295 1.17897 0.87354 0.95999 0.85241 1.40984 1.08509 1.57607 1.02691 1.20355 0.94169 1.48077 0.82465 0.86540 1.26521 0.96879 0.94584 1.03406 1.69705 1.08637 1.45112 1.30152 0.84647 0.77944 0.79345 0.74879 1.18828 1.19549 1.18388 0.90419 0.92862 0.84688 0.87059 0.87578 0.90680 0.75969 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 10.57 113.37 1.20 1.80 15 2 O -0.36 -12.65 10.58 -56.88 -0.60 -13.25 15 3 C 0.55 22.27 4.90 70.20 0.34 22.61 15 4 O -0.53 -23.06 16.90 19.73 0.33 -22.73 15 5 C -0.36 -15.37 5.80 -19.79 -0.11 -15.48 15 6 C 0.26 9.93 6.86 42.91 0.29 10.23 15 7 C -0.10 -2.63 9.85 71.24 0.70 -1.93 15 8 N -0.59 -23.27 10.32 -177.94 -1.84 -25.11 15 9 C 0.42 17.36 8.17 180.78 1.48 18.84 15 10 Cl 0.02 0.82 29.26 -2.72 -0.08 0.74 15 11 N -0.58 -27.68 9.19 -187.44 -1.72 -29.40 15 12 C 0.38 18.77 7.48 133.75 1.00 19.77 15 13 N -0.50 -25.64 5.34 -187.96 -1.00 -26.65 15 14 C -0.32 -16.76 9.71 84.06 0.82 -15.94 15 15 H 0.12 6.14 7.11 -2.91 -0.02 6.12 15 16 C -0.01 -0.49 5.50 84.90 0.47 -0.02 15 17 N -0.90 -46.33 13.05 21.66 0.28 -46.04 15 18 Si 1.01 39.05 29.55 68.60 2.03 41.08 15 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 20 H -0.27 -10.04 7.11 99.48 0.71 -9.34 15 21 H -0.26 -9.88 7.11 99.48 0.71 -9.18 15 22 H 0.08 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.05 1.49 8.14 -2.38 -0.02 1.47 15 24 H 0.14 2.42 8.14 -2.39 -0.02 2.40 15 25 H 0.11 2.40 8.14 -2.39 -0.02 2.38 15 26 H 0.11 2.37 8.14 -2.39 -0.02 2.36 15 27 H 0.07 1.96 7.18 -2.39 -0.02 1.94 15 28 H 0.40 21.27 6.84 -92.71 -0.63 20.64 15 29 H 0.29 13.73 8.31 -92.71 -0.77 12.96 15 Total: -1.00 -61.28 284.49 4.17 -57.12 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.58 Total: 24.36 kcal Atomic # 6 Polarization: 33.69 SS G_CDS: 6.18 Total: 39.88 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -4.28 Total: -127.20 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.27 Total: -35.98 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Atomic # 17 Polarization: 0.82 SS G_CDS: -0.08 Total: 0.74 kcal Total: -61.28 4.17 -57.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.401 kcal (2) G-P(sol) polarization free energy of solvation -61.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds