Wall clock time and date at job start Mon Mar 30 2020 01:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86800 * 119.99877 * 2 1 4 4 H 1.48497 * 109.47048 * 269.99500 * 3 2 1 5 5 H 1.48501 * 109.47363 * 30.00126 * 3 2 1 6 6 H 1.48498 * 109.46947 * 149.99760 * 3 2 1 7 7 C 1.38798 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00364 * 359.97438 * 7 2 1 9 9 N 1.36887 * 119.99321 * 180.02562 * 7 2 1 10 10 C 1.38561 * 119.99639 * 180.02562 * 9 7 2 11 11 N 1.32809 * 120.43586 * 359.97438 * 10 9 7 12 12 C 1.31886 * 120.19548 * 179.91515 * 11 10 9 13 13 Cl 1.73602 * 118.97391 * 180.28573 * 12 11 10 14 14 N 1.31480 * 122.05417 * 0.30974 * 12 11 10 15 15 C 1.33669 * 121.78149 * 359.96525 * 14 12 11 16 16 C 1.37825 * 117.97790 * 359.58230 * 15 14 12 17 17 S 1.76202 * 122.53463 * 180.68273 * 16 15 14 18 18 C 1.81709 * 102.48992 * 347.17127 * 17 16 15 19 19 C 1.53530 * 107.32088 * 46.23465 * 18 17 16 20 20 C 1.49856 * 117.12590 * 179.41355 * 15 14 12 21 21 H 0.96997 * 119.99992 * 0.02562 * 1 2 3 22 22 H 0.96995 * 120.01122 * 359.97438 * 9 7 2 23 23 H 1.09000 * 109.88381 * 165.68461 * 18 17 16 24 24 H 1.08996 * 109.88521 * 286.70223 * 18 17 16 25 25 H 1.09001 * 109.53100 * 47.37542 * 19 18 17 26 26 H 1.08994 * 109.53454 * 167.52635 * 19 18 17 27 27 H 1.08997 * 108.68273 * 36.90441 * 20 15 14 28 28 H 1.08999 * 108.57525 * 278.89335 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4402 0.7001 7 6 2.0096 -1.2021 0.0005 8 1 1.4697 -2.1373 0.0014 9 7 3.3785 -1.2020 0.0011 10 6 4.0713 -2.4019 0.0011 11 7 3.4160 -3.5571 0.0011 12 6 4.0803 -4.6965 -0.0006 13 17 3.1917 -6.1879 -0.0081 14 7 5.3944 -4.7381 0.0037 15 6 6.1340 -3.6247 0.0093 16 6 5.4780 -2.4126 0.0017 17 16 6.3333 -0.8722 -0.0097 18 6 8.0368 -1.3656 0.3858 19 6 8.3762 -2.5797 -0.4906 20 6 7.6229 -3.7936 0.0275 21 1 -0.4850 0.8400 -0.0004 22 1 3.8636 -0.3620 0.0007 23 1 8.7209 -0.5462 0.1650 24 1 8.1095 -1.6354 1.4393 25 1 8.0806 -2.3798 -1.5205 26 1 9.4486 -2.7703 -0.4497 27 1 7.8841 -4.6550 -0.5870 28 1 7.9378 -3.9885 1.0527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181965.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:12 Heat of formation + Delta-G solvation = 39.839457 kcal Electronic energy + Delta-G solvation = -16185.701204 eV Core-core repulsion = 13388.524544 eV Total energy + Delta-G solvation = -2797.176660 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 271.024 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06139 -36.61110 -36.33339 -35.13837 -32.73090 -31.69432 -29.95674 -27.53758 -25.14026 -23.68620 -22.50106 -20.48573 -19.06599 -17.16563 -16.93982 -16.57309 -15.35194 -14.97571 -14.59114 -14.46397 -13.96956 -13.57807 -13.37458 -13.17262 -12.47680 -12.21366 -12.06330 -11.67089 -11.43601 -11.27958 -10.90571 -10.76559 -10.56841 -10.51952 -10.33145 -9.64724 -9.43007 -9.42386 -8.37211 -8.26052 -6.95049 -6.76394 -4.06455 1.55353 1.86668 2.01368 2.17345 2.77841 2.91250 2.92000 2.96550 3.78289 4.18018 4.29815 4.52318 4.73526 4.84263 4.93980 5.27817 5.32681 5.51717 5.62333 5.65477 5.77616 5.96126 6.05533 6.20072 6.75356 7.06435 7.61779 7.82602 8.28737 8.68368 8.87838 9.15794 10.32000 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.008998 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.372377 B = 3110.937126 C = 4935.761590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.049 3.951 3 Si 0.868 3.132 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.291 4.291 8 H 0.138 0.862 9 N -0.510 5.510 10 C 0.394 3.606 11 N -0.551 5.551 12 C 0.415 3.585 13 Cl -0.011 7.011 14 N -0.600 5.600 15 C 0.215 3.785 16 C -0.279 4.279 17 S -0.136 6.136 18 C -0.099 4.099 19 C -0.118 4.118 20 C -0.070 4.070 21 H 0.283 0.717 22 H 0.393 0.607 23 H 0.108 0.892 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.039 -1.843 0.150 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.161 4.161 3 Si 0.692 3.308 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.422 4.422 8 H 0.156 0.844 9 N -0.117 5.117 10 C 0.141 3.859 11 N -0.283 5.283 12 C 0.115 3.885 13 Cl 0.017 6.983 14 N -0.331 5.331 15 C 0.073 3.927 16 C -0.405 4.405 17 S 0.098 5.902 18 C -0.248 4.248 19 C -0.157 4.157 20 C -0.108 4.108 21 H 0.094 0.906 22 H 0.232 0.768 23 H 0.126 0.874 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.568 -1.322 -0.042 12.638 hybrid contribution 1.036 0.536 0.316 1.209 sum 13.604 -0.786 0.274 13.630 Atomic orbital electron populations 1.69676 1.05724 1.28814 1.43443 1.25170 0.95743 0.98663 0.96476 0.86747 0.80598 0.83290 0.80121 1.18531 1.18999 1.18224 1.19862 0.78577 0.97739 1.46011 0.84442 1.41341 1.07245 1.03335 1.59759 1.17293 0.84947 0.86210 0.97407 1.67350 1.39114 0.95894 1.25925 1.22007 0.85943 0.87105 0.93429 1.98355 1.74259 1.29294 1.96440 1.67646 1.05849 1.31003 1.28590 1.20352 0.94952 0.86201 0.91153 1.21502 0.95772 0.97050 1.26176 1.84966 1.05526 1.09690 1.90004 1.23700 0.95814 1.02018 1.03219 1.21624 1.00615 0.93406 1.00067 1.20001 0.88413 0.99342 1.03066 0.90579 0.76810 0.87413 0.89348 0.90166 0.89810 0.88854 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.71 13.96 55.49 0.77 -21.93 15 2 C 0.05 1.25 5.50 -17.46 -0.10 1.15 15 3 Si 0.87 18.44 27.73 -169.99 -4.71 13.73 15 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 6 H -0.26 -5.22 6.52 56.52 0.37 -4.85 15 7 C -0.29 -7.74 10.19 -15.09 -0.15 -7.89 15 8 H 0.14 4.05 7.34 -52.49 -0.39 3.66 15 9 N -0.51 -12.30 5.15 -10.80 -0.06 -12.36 15 10 C 0.39 9.30 7.46 -154.51 -1.15 8.15 15 11 N -0.55 -13.40 9.22 -10.73 -0.10 -13.50 15 12 C 0.42 9.08 8.16 -92.34 -0.75 8.33 15 13 Cl -0.01 -0.21 29.26 -51.86 -1.52 -1.72 15 14 N -0.60 -12.25 10.21 -8.16 -0.08 -12.33 15 15 C 0.22 4.01 6.64 -82.35 -0.55 3.46 15 16 C -0.28 -5.65 6.06 -38.82 -0.24 -5.89 15 17 S -0.14 -2.29 20.49 -107.50 -2.20 -4.50 15 18 C -0.10 -1.14 6.53 37.43 0.24 -0.89 15 19 C -0.12 -1.26 5.83 -26.98 -0.16 -1.42 15 20 C -0.07 -0.93 5.53 -28.82 -0.16 -1.09 15 21 H 0.28 6.98 8.31 -40.82 -0.34 6.64 15 22 H 0.39 8.86 4.20 -40.82 -0.17 8.68 15 23 H 0.11 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.09 0.96 8.09 -51.93 -0.42 0.54 15 25 H 0.08 0.94 8.03 -51.93 -0.42 0.52 15 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 15 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 LS Contribution 267.20 15.07 4.03 4.03 Total: -1.00 -28.38 267.20 -9.13 -37.51 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -2.25 Total: 7.15 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -3.01 Total: 3.91 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.54 Total: -60.12 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.71 Total: 13.73 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.20 Total: -4.50 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.52 Total: -1.72 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.38 -9.13 -37.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181965.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.352 kcal (2) G-P(sol) polarization free energy of solvation -28.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds