Wall clock time and date at job start Mon Mar 30 2020 01:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86800 * 119.99877 * 2 1 4 4 H 1.48497 * 109.47048 * 269.99500 * 3 2 1 5 5 H 1.48501 * 109.47363 * 30.00126 * 3 2 1 6 6 H 1.48498 * 109.46947 * 149.99760 * 3 2 1 7 7 C 1.38798 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00364 * 359.97438 * 7 2 1 9 9 N 1.36887 * 119.99321 * 180.02562 * 7 2 1 10 10 C 1.38561 * 119.99639 * 180.02562 * 9 7 2 11 11 N 1.32809 * 120.43586 * 359.97438 * 10 9 7 12 12 C 1.31886 * 120.19548 * 179.91515 * 11 10 9 13 13 Cl 1.73602 * 118.97391 * 180.28573 * 12 11 10 14 14 N 1.31480 * 122.05417 * 0.30974 * 12 11 10 15 15 C 1.33669 * 121.78149 * 359.96525 * 14 12 11 16 16 C 1.37825 * 117.97790 * 359.58230 * 15 14 12 17 17 S 1.76202 * 122.53463 * 180.68273 * 16 15 14 18 18 C 1.81709 * 102.48992 * 347.17127 * 17 16 15 19 19 C 1.53530 * 107.32088 * 46.23465 * 18 17 16 20 20 C 1.49856 * 117.12590 * 179.41355 * 15 14 12 21 21 H 0.96997 * 119.99992 * 0.02562 * 1 2 3 22 22 H 0.96995 * 120.01122 * 359.97438 * 9 7 2 23 23 H 1.09000 * 109.88381 * 165.68461 * 18 17 16 24 24 H 1.08996 * 109.88521 * 286.70223 * 18 17 16 25 25 H 1.09001 * 109.53100 * 47.37542 * 19 18 17 26 26 H 1.08994 * 109.53454 * 167.52635 * 19 18 17 27 27 H 1.08997 * 108.68273 * 36.90441 * 20 15 14 28 28 H 1.08999 * 108.57525 * 278.89335 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4402 0.7001 7 6 2.0096 -1.2021 0.0005 8 1 1.4697 -2.1373 0.0014 9 7 3.3785 -1.2020 0.0011 10 6 4.0713 -2.4019 0.0011 11 7 3.4160 -3.5571 0.0011 12 6 4.0803 -4.6965 -0.0006 13 17 3.1917 -6.1879 -0.0081 14 7 5.3944 -4.7381 0.0037 15 6 6.1340 -3.6247 0.0093 16 6 5.4780 -2.4126 0.0017 17 16 6.3333 -0.8722 -0.0097 18 6 8.0368 -1.3656 0.3858 19 6 8.3762 -2.5797 -0.4906 20 6 7.6229 -3.7936 0.0275 21 1 -0.4850 0.8400 -0.0004 22 1 3.8636 -0.3620 0.0007 23 1 8.7209 -0.5462 0.1650 24 1 8.1095 -1.6354 1.4393 25 1 8.0806 -2.3798 -1.5205 26 1 9.4486 -2.7703 -0.4497 27 1 7.8841 -4.6550 -0.5870 28 1 7.9378 -3.9885 1.0527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181965.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:12 Heat of formation + Delta-G solvation = 22.498147 kcal Electronic energy + Delta-G solvation = -16186.453179 eV Core-core repulsion = 13388.524544 eV Total energy + Delta-G solvation = -2797.928635 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 271.024 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.75321 -38.23551 -37.85433 -36.51575 -34.53758 -33.29032 -31.61435 -28.71956 -26.89507 -25.24945 -23.97120 -21.79336 -20.86110 -18.84465 -18.38533 -18.17844 -16.80029 -16.59467 -16.28202 -15.92252 -15.24425 -15.01044 -14.67657 -14.43129 -14.20715 -13.89490 -13.32298 -13.02788 -12.76313 -12.62575 -12.50328 -12.32098 -12.12758 -12.00360 -11.72713 -11.20635 -11.11315 -10.85207 -10.10837 -9.98224 -8.63441 -8.37593 -6.04700 -0.08673 0.33458 0.43040 0.71097 1.21758 1.27437 1.30730 1.50536 2.05016 2.45823 2.57590 3.05031 3.24118 3.70095 3.84703 3.96218 4.09720 4.28025 4.49140 4.63880 4.72442 4.87947 5.01775 5.15204 5.23429 5.35566 5.77858 6.02326 6.38990 6.90048 6.96119 7.39926 8.50335 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.008998 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.372377 B = 3110.937126 C = 4935.761590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.935 3.065 4 H -0.252 1.252 5 H -0.257 1.257 6 H -0.243 1.243 7 C -0.314 4.314 8 H 0.090 0.910 9 N -0.528 5.528 10 C 0.394 3.606 11 N -0.592 5.592 12 C 0.397 3.603 13 Cl 0.010 6.990 14 N -0.589 5.589 15 C 0.211 3.789 16 C -0.284 4.284 17 S -0.162 6.162 18 C -0.086 4.086 19 C -0.111 4.111 20 C -0.071 4.071 21 H 0.287 0.713 22 H 0.401 0.599 23 H 0.143 0.857 24 H 0.101 0.899 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.728 -1.498 0.338 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.202 4.202 3 Si 0.754 3.246 4 H -0.176 1.176 5 H -0.181 1.181 6 H -0.167 1.167 7 C -0.444 4.444 8 H 0.108 0.892 9 N -0.140 5.140 10 C 0.141 3.859 11 N -0.325 5.325 12 C 0.098 3.902 13 Cl 0.038 6.962 14 N -0.318 5.318 15 C 0.068 3.932 16 C -0.408 4.408 17 S 0.072 5.928 18 C -0.233 4.233 19 C -0.150 4.150 20 C -0.108 4.108 21 H 0.097 0.903 22 H 0.240 0.760 23 H 0.161 0.839 24 H 0.120 0.880 25 H 0.089 0.911 26 H 0.150 0.850 27 H 0.125 0.875 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 17.306 -1.025 0.146 17.337 hybrid contribution -0.100 0.081 0.262 0.292 sum 17.206 -0.944 0.408 17.236 Atomic orbital electron populations 1.69791 1.07423 1.29903 1.46472 1.25912 0.96453 1.02035 0.95762 0.85753 0.79758 0.78386 0.80661 1.17629 1.18109 1.16659 1.19395 0.79886 0.96528 1.48626 0.89196 1.41080 1.06075 1.03742 1.63109 1.17945 0.86787 0.86065 0.95062 1.67357 1.40870 0.97082 1.27158 1.22422 0.86782 0.87504 0.93490 1.98352 1.74043 1.27505 1.96290 1.67842 1.05089 1.32035 1.26841 1.21438 0.97698 0.84993 0.89054 1.21848 0.94760 0.99860 1.24348 1.85074 1.09910 1.07899 1.89878 1.23996 0.91421 1.03650 1.04247 1.21661 1.02855 0.91456 0.99001 1.20258 0.84243 1.01416 1.04900 0.90283 0.75966 0.83871 0.88002 0.91065 0.85001 0.87513 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.47 13.96 21.65 0.30 -51.17 15 2 C 0.00 0.11 5.50 84.87 0.47 0.58 15 3 Si 0.93 38.83 27.73 68.60 1.90 40.73 15 4 H -0.25 -10.02 7.11 99.48 0.71 -9.31 15 5 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 6 H -0.24 -9.33 6.52 99.48 0.65 -8.68 15 7 C -0.31 -17.79 10.19 84.04 0.86 -16.93 15 8 H 0.09 5.80 7.34 -2.91 -0.02 5.78 15 9 N -0.53 -26.32 5.15 -188.10 -0.97 -27.29 15 10 C 0.39 18.94 7.46 133.47 1.00 19.94 15 11 N -0.59 -29.77 9.22 -187.86 -1.73 -31.50 15 12 C 0.40 17.45 8.16 180.95 1.48 18.93 15 13 Cl 0.01 0.39 29.26 -2.72 -0.08 0.31 15 14 N -0.59 -23.12 10.21 -179.72 -1.83 -24.96 15 15 C 0.21 7.30 6.64 41.92 0.28 7.58 15 16 C -0.28 -11.10 6.06 22.77 0.14 -10.96 15 17 S -0.16 -5.01 20.49 -56.49 -1.16 -6.17 15 18 C -0.09 -1.48 6.53 72.16 0.47 -1.01 15 19 C -0.11 -1.70 5.83 30.43 0.18 -1.53 15 20 C -0.07 -1.52 5.53 29.24 0.16 -1.36 15 21 H 0.29 14.94 8.31 -92.71 -0.77 14.17 15 22 H 0.40 18.18 4.20 -92.71 -0.39 17.79 15 23 H 0.14 1.60 8.14 -2.39 -0.02 1.58 15 24 H 0.10 1.60 8.09 -2.39 -0.02 1.58 15 25 H 0.07 1.30 8.03 -2.39 -0.02 1.28 15 26 H 0.13 0.96 8.14 -2.39 -0.02 0.94 15 27 H 0.11 2.10 8.14 -2.39 -0.02 2.08 15 28 H 0.11 1.93 8.14 -2.39 -0.02 1.91 15 Total: -1.00 -67.38 267.20 2.22 -65.16 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.76 Total: 19.65 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 5.02 Total: 15.24 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -4.23 Total: -134.92 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.90 Total: 40.73 kcal Atomic # 16 Polarization: -5.01 SS G_CDS: -1.16 Total: -6.17 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -0.08 Total: 0.31 kcal Total: -67.38 2.22 -65.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181965.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.654 kcal (2) G-P(sol) polarization free energy of solvation -67.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds