Wall clock time and date at job start Mon Mar 30 2020 00:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.46688 * 2 1 4 4 C 1.42902 * 113.99660 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47006 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47089 * 185.50146 * 5 4 3 7 7 H 1.08998 * 109.47490 * 57.50378 * 6 5 4 8 8 C 1.53004 * 109.47460 * 297.50199 * 6 5 4 9 9 N 1.46904 * 109.46979 * 177.50407 * 6 5 4 10 10 C 1.46957 * 110.99749 * 304.94462 * 9 6 5 11 11 C 1.53053 * 109.36133 * 176.81263 * 10 9 6 12 12 N 1.46958 * 109.36289 * 58.40477 * 11 10 9 13 13 C 1.46900 * 110.99928 * 176.80841 * 12 11 10 14 14 C 1.50708 * 109.47132 * 59.38032 * 13 12 11 15 15 H 1.08001 * 119.99682 * 4.12956 * 14 13 12 16 16 C 1.37874 * 120.00135 * 184.12736 * 14 13 12 17 17 N 1.31510 * 119.99817 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99876 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46832 * 90.00029 * 18 16 14 20 20 H 1.48503 * 109.46710 * 209.99730 * 18 16 14 21 21 H 1.48491 * 109.47315 * 329.99642 * 18 16 14 22 22 C 1.46955 * 110.88143 * 300.67791 * 12 11 10 23 23 C 1.46958 * 110.99752 * 181.14928 * 9 6 5 24 24 H 1.08994 * 109.47115 * 59.99808 * 1 2 3 25 25 H 1.08999 * 109.46957 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47037 * 299.99960 * 1 2 3 27 27 H 1.08997 * 109.47461 * 240.00684 * 2 1 3 28 28 H 1.09000 * 109.47396 * 119.99551 * 2 1 3 29 29 H 1.09002 * 109.47007 * 60.00414 * 4 3 2 30 30 H 1.09001 * 109.47310 * 300.00152 * 4 3 2 31 31 H 1.09001 * 109.47165 * 65.50777 * 5 4 3 32 32 H 1.08995 * 109.47557 * 305.50181 * 5 4 3 33 33 H 1.08994 * 109.46881 * 59.99505 * 8 6 5 34 34 H 1.09000 * 109.47057 * 180.02562 * 8 6 5 35 35 H 1.09008 * 109.46905 * 300.00484 * 8 6 5 36 36 H 1.08999 * 109.49104 * 296.78381 * 10 9 6 37 37 H 1.09004 * 109.48733 * 56.85098 * 10 9 6 38 38 H 1.09001 * 109.49163 * 298.43641 * 11 10 9 39 39 H 1.09001 * 109.48334 * 178.37064 * 11 10 9 40 40 H 1.09000 * 109.47217 * 179.38236 * 13 12 11 41 41 H 1.09004 * 109.47266 * 299.38572 * 13 12 11 42 42 H 0.97007 * 120.00030 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.48727 * 299.35223 * 22 12 11 44 44 H 1.09001 * 109.49071 * 179.29139 * 22 12 11 45 45 H 1.08999 * 109.49342 * 303.15415 * 23 9 6 46 46 H 1.08996 * 109.49037 * 63.19640 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 6 5.3442 3.0610 -0.1378 7 1 5.6678 2.5608 -1.0506 8 6 6.0201 2.4071 1.0691 9 7 5.7174 4.4805 -0.1985 10 6 4.9946 5.1694 -1.2768 11 6 5.3502 6.6579 -1.2558 12 7 6.8027 6.8140 -1.4159 13 6 7.1760 8.2335 -1.4767 14 6 6.7401 8.9224 -0.2091 15 1 6.2966 8.3493 0.5917 16 6 6.9077 10.2840 -0.0718 17 7 6.5269 10.8851 1.0342 18 14 7.6743 11.2751 -1.4572 19 1 6.6079 11.7495 -2.3753 20 1 8.3950 12.4431 -0.8901 21 1 8.6294 10.4207 -2.2074 22 6 7.5256 6.1251 -0.3377 23 6 7.1699 4.6367 -0.3586 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8340 0.9766 -0.8892 30 1 3.8333 0.9768 0.8908 31 1 3.5069 3.3999 0.9347 32 1 3.3428 3.4429 -0.8372 33 1 5.7431 1.3540 1.1143 34 1 7.1022 2.4948 0.9712 35 1 5.6964 2.9073 1.9820 36 1 5.2798 4.7408 -2.2375 37 1 3.9212 5.0499 -1.1292 38 1 5.0403 7.0925 -0.3055 39 1 4.8376 7.1657 -2.0728 40 1 8.2572 8.3206 -1.5843 41 1 6.6869 8.7016 -2.3311 42 1 6.6451 11.8430 1.1310 43 1 7.2403 6.5537 0.6230 44 1 8.5989 6.2447 -0.4852 45 1 7.6825 4.1288 0.4583 46 1 7.4799 4.2017 -1.3087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172424840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:49 Heat of formation + Delta-G solvation = -41.787287 kcal Electronic energy + Delta-G solvation = -21502.600141 eV Core-core repulsion = 18427.180134 eV Total energy + Delta-G solvation = -3075.420007 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.26696 -38.17125 -36.16112 -33.20309 -32.12137 -31.15283 -30.57438 -28.46803 -27.59038 -25.08649 -23.67157 -23.02804 -22.35942 -21.41291 -19.95947 -19.05728 -17.08905 -16.80804 -16.43830 -15.91154 -14.89204 -14.70230 -14.44379 -14.21377 -14.09498 -13.99559 -13.82369 -13.22831 -12.81532 -12.62800 -12.51095 -12.33203 -12.18928 -11.96598 -11.67334 -11.50311 -11.19300 -11.14652 -11.02361 -10.92670 -10.71138 -10.54913 -10.42882 -10.13119 -9.94231 -9.82868 -9.75276 -9.43889 -8.56532 -8.01607 -7.16010 -6.07145 -4.06717 3.29376 3.36972 3.39274 3.40956 4.15001 4.42092 4.74676 4.81872 4.84166 4.97419 5.00606 5.07198 5.12687 5.20724 5.25991 5.30503 5.36565 5.41793 5.47491 5.62070 5.65277 5.77291 5.80048 5.83482 5.86468 5.92090 5.98548 6.00917 6.16269 6.17214 6.29574 6.38309 6.60609 6.81987 6.91350 6.96058 7.02521 7.08897 7.38704 7.41785 7.59647 8.09215 8.13475 8.48588 8.97201 9.55707 11.05810 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.031488 B = 0.003368 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.023242 B = 8311.379421 C = 8669.045844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.065 3.935 5 C -0.115 4.115 6 C 0.086 3.914 7 H 0.036 0.964 8 C -0.149 4.149 9 N -0.530 5.530 10 C 0.055 3.945 11 C 0.063 3.937 12 N -0.538 5.538 13 C 0.154 3.846 14 C -0.549 4.549 15 H 0.077 0.923 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C 0.062 3.938 23 C 0.059 3.941 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.026 0.974 41 H 0.024 0.976 42 H 0.263 0.737 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 -21.484 -2.762 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.309 6.309 4 C -0.012 4.012 5 C -0.153 4.153 6 C -0.023 4.023 7 H 0.054 0.946 8 C -0.206 4.206 9 N -0.256 5.256 10 C -0.073 4.073 11 C -0.066 4.066 12 N -0.262 5.262 13 C 0.028 3.972 14 C -0.588 4.588 15 H 0.095 0.905 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.706 3.294 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.067 4.067 23 C -0.069 4.069 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.724 -21.144 -2.682 22.068 hybrid contribution 0.574 0.488 -0.617 0.973 sum -5.150 -20.656 -3.299 21.542 Atomic orbital electron populations 1.21744 0.93805 1.02096 1.03268 1.22435 0.95600 0.84044 0.99865 1.87900 1.21444 1.26150 1.95400 1.22537 0.80872 0.97828 0.99935 1.21616 0.94946 0.94389 1.04340 1.21466 0.94070 0.89267 0.97477 0.94564 1.21953 1.00677 0.99416 0.98547 1.62140 1.06735 1.10447 1.46243 1.22310 0.97985 0.95344 0.91613 1.21957 0.89897 0.93048 1.01689 1.62619 1.05319 1.14875 1.43349 1.20149 0.96175 0.84250 0.96657 1.21716 1.41543 0.93513 1.02024 0.90470 1.24976 0.94788 0.97846 0.95493 1.69934 1.47426 1.10176 1.26201 0.86802 0.80031 0.79910 0.82672 1.20236 1.21360 1.18945 1.21956 0.97872 0.91412 0.95436 1.22249 0.87445 0.97814 0.99386 0.91822 0.91241 0.91774 0.93612 0.93549 0.93693 0.93114 0.90133 0.90627 0.92632 0.92329 0.91482 0.95020 0.90641 0.92554 0.91465 0.95550 0.95765 0.92735 0.92823 0.91490 0.90864 0.95003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.39 -4.53 10.34 -35.23 -0.36 -4.90 16 4 C 0.07 0.67 5.49 37.16 0.20 0.88 16 5 C -0.12 -1.38 4.78 -26.73 -0.13 -1.50 16 6 C 0.09 1.07 2.17 -67.71 -0.15 0.92 16 7 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 8 C -0.15 -1.61 8.70 37.16 0.32 -1.28 16 9 N -0.53 -8.29 4.58 -226.48 -1.04 -9.33 16 10 C 0.06 0.90 5.20 -3.77 -0.02 0.88 16 11 C 0.06 1.26 5.24 -3.77 -0.02 1.24 16 12 N -0.54 -11.46 4.92 -235.90 -1.16 -12.62 16 13 C 0.15 3.77 4.20 -4.97 -0.02 3.75 16 14 C -0.55 -15.44 8.21 -34.44 -0.28 -15.72 16 15 H 0.08 2.38 6.06 -52.49 -0.32 2.06 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 18 Si 0.88 21.61 27.39 -169.99 -4.66 16.95 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.26 -6.28 6.66 56.52 0.38 -5.90 16 22 C 0.06 1.22 5.31 -3.77 -0.02 1.20 16 23 C 0.06 0.94 5.34 -3.77 -0.02 0.92 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.47 6.78 -51.93 -0.35 0.12 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.96 6.12 -51.93 -0.32 0.64 16 33 H 0.05 0.49 6.62 -51.93 -0.34 0.15 16 34 H 0.06 0.63 6.36 -51.93 -0.33 0.30 16 35 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 1.13 5.99 -51.93 -0.31 0.82 16 38 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.03 0.65 7.47 -51.93 -0.39 0.26 16 41 H 0.02 0.59 7.34 -51.93 -0.38 0.21 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.05 1.21 6.77 -51.93 -0.35 0.86 16 44 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 45 H 0.07 1.04 6.17 -51.93 -0.32 0.72 16 46 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -30.73 345.57 -9.25 -39.97 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -8.41 Total: -1.67 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 0.40 Total: -6.76 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -1.42 Total: -48.82 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.36 Total: -4.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.66 Total: 16.95 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.73 -9.25 -39.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172424840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.814 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds