Wall clock time and date at job start Mon Mar 30 2020 00:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.46688 * 2 1 4 4 C 1.42902 * 113.99660 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47006 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47089 * 185.50146 * 5 4 3 7 7 H 1.08998 * 109.47490 * 57.50378 * 6 5 4 8 8 C 1.53004 * 109.47460 * 297.50199 * 6 5 4 9 9 N 1.46904 * 109.46979 * 177.50407 * 6 5 4 10 10 C 1.46957 * 110.99749 * 304.94462 * 9 6 5 11 11 C 1.53053 * 109.36133 * 176.81263 * 10 9 6 12 12 N 1.46958 * 109.36289 * 58.40477 * 11 10 9 13 13 C 1.46900 * 110.99928 * 176.80841 * 12 11 10 14 14 C 1.50708 * 109.47132 * 59.38032 * 13 12 11 15 15 H 1.08001 * 119.99682 * 4.12956 * 14 13 12 16 16 C 1.37874 * 120.00135 * 184.12736 * 14 13 12 17 17 N 1.31510 * 119.99817 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99876 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46832 * 90.00029 * 18 16 14 20 20 H 1.48503 * 109.46710 * 209.99730 * 18 16 14 21 21 H 1.48491 * 109.47315 * 329.99642 * 18 16 14 22 22 C 1.46955 * 110.88143 * 300.67791 * 12 11 10 23 23 C 1.46958 * 110.99752 * 181.14928 * 9 6 5 24 24 H 1.08994 * 109.47115 * 59.99808 * 1 2 3 25 25 H 1.08999 * 109.46957 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47037 * 299.99960 * 1 2 3 27 27 H 1.08997 * 109.47461 * 240.00684 * 2 1 3 28 28 H 1.09000 * 109.47396 * 119.99551 * 2 1 3 29 29 H 1.09002 * 109.47007 * 60.00414 * 4 3 2 30 30 H 1.09001 * 109.47310 * 300.00152 * 4 3 2 31 31 H 1.09001 * 109.47165 * 65.50777 * 5 4 3 32 32 H 1.08995 * 109.47557 * 305.50181 * 5 4 3 33 33 H 1.08994 * 109.46881 * 59.99505 * 8 6 5 34 34 H 1.09000 * 109.47057 * 180.02562 * 8 6 5 35 35 H 1.09008 * 109.46905 * 300.00484 * 8 6 5 36 36 H 1.08999 * 109.49104 * 296.78381 * 10 9 6 37 37 H 1.09004 * 109.48733 * 56.85098 * 10 9 6 38 38 H 1.09001 * 109.49163 * 298.43641 * 11 10 9 39 39 H 1.09001 * 109.48334 * 178.37064 * 11 10 9 40 40 H 1.09000 * 109.47217 * 179.38236 * 13 12 11 41 41 H 1.09004 * 109.47266 * 299.38572 * 13 12 11 42 42 H 0.97007 * 120.00030 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.48727 * 299.35223 * 22 12 11 44 44 H 1.09001 * 109.49071 * 179.29139 * 22 12 11 45 45 H 1.08999 * 109.49342 * 303.15415 * 23 9 6 46 46 H 1.08996 * 109.49037 * 63.19640 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 6 5.3442 3.0610 -0.1378 7 1 5.6678 2.5608 -1.0506 8 6 6.0201 2.4071 1.0691 9 7 5.7174 4.4805 -0.1985 10 6 4.9946 5.1694 -1.2768 11 6 5.3502 6.6579 -1.2558 12 7 6.8027 6.8140 -1.4159 13 6 7.1760 8.2335 -1.4767 14 6 6.7401 8.9224 -0.2091 15 1 6.2966 8.3493 0.5917 16 6 6.9077 10.2840 -0.0718 17 7 6.5269 10.8851 1.0342 18 14 7.6743 11.2751 -1.4572 19 1 6.6079 11.7495 -2.3753 20 1 8.3950 12.4431 -0.8901 21 1 8.6294 10.4207 -2.2074 22 6 7.5256 6.1251 -0.3377 23 6 7.1699 4.6367 -0.3586 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8340 0.9766 -0.8892 30 1 3.8333 0.9768 0.8908 31 1 3.5069 3.3999 0.9347 32 1 3.3428 3.4429 -0.8372 33 1 5.7431 1.3540 1.1143 34 1 7.1022 2.4948 0.9712 35 1 5.6964 2.9073 1.9820 36 1 5.2798 4.7408 -2.2375 37 1 3.9212 5.0499 -1.1292 38 1 5.0403 7.0925 -0.3055 39 1 4.8376 7.1657 -2.0728 40 1 8.2572 8.3206 -1.5843 41 1 6.6869 8.7016 -2.3311 42 1 6.6451 11.8430 1.1310 43 1 7.2403 6.5537 0.6230 44 1 8.5989 6.2447 -0.4852 45 1 7.6825 4.1288 0.4583 46 1 7.4799 4.2017 -1.3087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172424840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:48 Heat of formation + Delta-G solvation = -64.329614 kcal Electronic energy + Delta-G solvation = -21503.577650 eV Core-core repulsion = 18427.180134 eV Total energy + Delta-G solvation = -3076.397516 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55386 -39.08237 -37.55595 -34.86604 -33.69665 -32.14656 -31.87948 -29.89749 -28.92695 -26.67416 -24.91136 -23.73852 -23.65552 -23.12236 -21.09470 -20.62432 -18.88940 -17.99411 -17.23072 -17.09393 -16.34136 -16.00790 -15.94879 -15.77050 -15.41755 -15.23922 -14.88058 -14.51255 -14.26665 -14.09701 -13.70995 -13.62302 -13.21739 -13.03013 -12.86882 -12.70808 -12.47978 -12.47048 -12.27447 -12.10508 -12.08129 -11.99898 -11.84886 -11.75069 -11.66770 -11.30852 -11.24003 -10.79079 -10.50190 -9.25001 -8.99336 -8.31287 -6.36729 1.35416 1.36547 1.49043 2.33746 2.58994 3.03474 3.05740 3.31274 3.90860 3.96377 4.01489 4.17839 4.19182 4.24320 4.34485 4.36027 4.46616 4.48169 4.50656 4.52580 4.54876 4.55409 4.69236 4.83259 4.84614 4.87169 4.99151 5.01355 5.02604 5.04416 5.07725 5.14898 5.16593 5.20948 5.26549 5.30946 5.41743 5.51027 6.04913 6.12650 6.23163 6.32214 6.37802 6.40439 6.70635 7.29950 8.85272 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.031488 B = 0.003368 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.023242 B = 8311.379421 C = 8669.045844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.417 6.417 4 C 0.069 3.931 5 C -0.111 4.111 6 C 0.089 3.911 7 H 0.050 0.950 8 C -0.145 4.145 9 N -0.551 5.551 10 C 0.068 3.932 11 C 0.065 3.935 12 N -0.531 5.531 13 C 0.161 3.839 14 C -0.548 4.548 15 H 0.032 0.968 16 C 0.009 3.991 17 N -0.949 5.949 18 Si 0.952 3.048 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.246 1.246 22 C 0.062 3.938 23 C 0.070 3.930 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.013 0.987 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.266 0.734 43 H 0.012 0.988 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.910 -23.662 -4.628 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.337 6.337 4 C -0.008 4.008 5 C -0.149 4.149 6 C -0.018 4.018 7 H 0.068 0.932 8 C -0.202 4.202 9 N -0.277 5.277 10 C -0.060 4.060 11 C -0.064 4.064 12 N -0.254 5.254 13 C 0.033 3.967 14 C -0.587 4.587 15 H 0.050 0.950 16 C -0.189 4.189 17 N -0.589 5.589 18 Si 0.775 3.225 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.169 1.169 22 C -0.067 4.067 23 C -0.058 4.058 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.032 0.968 39 H 0.087 0.913 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.031 0.969 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.035 -23.362 -4.553 24.328 hybrid contribution 0.285 1.100 0.059 1.138 sum -4.749 -22.261 -4.493 23.202 Atomic orbital electron populations 1.21779 0.93254 1.03344 1.02507 1.22654 0.96161 0.82855 1.00961 1.87867 1.22078 1.28178 1.95621 1.22503 0.80650 0.96412 1.01194 1.21536 0.94635 0.95783 1.02902 1.21525 0.94385 0.87140 0.98791 0.93240 1.21943 1.00684 1.00604 0.97011 1.62102 1.06535 1.12879 1.46142 1.22142 0.98803 0.92542 0.92534 1.21957 0.89120 0.95942 0.99405 1.62667 1.06118 1.12908 1.43754 1.20028 0.96197 0.85884 0.94590 1.21891 1.40754 0.93628 1.02438 0.94966 1.25963 0.95421 0.99164 0.98359 1.70094 1.49327 1.10709 1.28795 0.85635 0.79521 0.78178 0.79123 1.19183 1.20977 1.16893 1.22005 0.98060 0.93850 0.92773 1.22131 0.87945 0.94787 1.00906 0.92526 0.89004 0.92585 0.92426 0.92435 0.92295 0.91819 0.91977 0.91614 0.90082 0.91935 0.92873 0.93771 0.89510 0.96828 0.91276 0.95139 0.95236 0.92532 0.96914 0.90810 0.88816 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.42 -9.10 10.34 -148.98 -1.54 -10.64 16 4 C 0.07 1.27 5.49 71.98 0.40 1.66 16 5 C -0.11 -2.51 4.78 30.59 0.15 -2.36 16 6 C 0.09 2.03 2.17 44.92 0.10 2.12 16 7 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 8 C -0.15 -2.79 8.70 71.98 0.63 -2.16 16 9 N -0.55 -16.71 4.58 -870.45 -3.98 -20.70 16 10 C 0.07 2.16 5.20 86.31 0.45 2.60 16 11 C 0.06 2.64 5.24 86.31 0.45 3.09 16 12 N -0.53 -22.63 4.92 -900.26 -4.43 -27.06 16 13 C 0.16 7.83 4.20 85.56 0.36 8.19 16 14 C -0.55 -31.96 8.21 25.60 0.21 -31.75 16 15 H 0.03 2.13 6.06 -2.91 -0.02 2.11 16 16 C 0.01 0.51 5.47 84.65 0.46 0.97 16 17 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 18 Si 0.95 44.57 27.39 68.60 1.88 46.45 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.25 -10.65 6.66 99.48 0.66 -9.99 16 22 C 0.06 2.45 5.31 86.31 0.46 2.90 16 23 C 0.07 2.12 5.34 86.31 0.46 2.58 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.00 6.78 -2.39 -0.02 0.98 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.60 6.12 -2.39 -0.01 1.59 16 33 H 0.08 1.15 6.62 -2.39 -0.02 1.14 16 34 H 0.06 1.16 6.36 -2.39 -0.02 1.14 16 35 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 2.56 5.99 -2.38 -0.01 2.55 16 38 H 0.01 0.66 6.62 -2.39 -0.02 0.64 16 39 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.03 1.47 7.47 -2.39 -0.02 1.45 16 41 H 0.03 1.41 7.34 -2.39 -0.02 1.39 16 42 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 43 H 0.01 0.60 6.77 -2.39 -0.02 0.58 16 44 H 0.07 2.76 8.13 -2.39 -0.02 2.74 16 45 H 0.09 2.46 6.17 -2.39 -0.01 2.45 16 46 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.85 345.57 -1.56 -70.41 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.88 Total: 13.78 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 5.34 Total: -12.16 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -8.11 Total: -107.84 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -1.54 Total: -10.64 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -68.85 -1.56 -70.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172424840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.077 kcal (2) G-P(sol) polarization free energy of solvation -68.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds