Wall clock time and date at job start Mon Mar 30 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 S 1.81400 * 109.47583 * 179.97438 * 4 2 1 6 6 C 1.76203 * 103.00264 * 179.97438 * 5 4 2 7 7 C 1.38959 * 120.06498 * 359.72885 * 6 5 4 8 8 C 1.38086 * 119.93055 * 179.78858 * 7 6 5 9 9 C 1.38399 * 120.06352 * 0.48533 * 8 7 6 10 10 Cl 1.73604 * 119.93021 * 179.72300 * 9 8 7 11 11 C 1.38392 * 120.14002 * 359.74381 * 9 8 7 12 12 C 1.38093 * 120.06500 * 0.02562 * 11 9 8 13 13 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 14 14 C 1.36940 * 120.00565 * 275.00309 * 13 2 1 15 15 H 1.08004 * 119.99402 * 359.97438 * 14 13 2 16 16 C 1.38815 * 120.00150 * 179.97438 * 14 13 2 17 17 N 1.31618 * 120.00111 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99847 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47050 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47205 * 119.99454 * 18 16 14 21 21 H 1.48500 * 109.46799 * 240.00306 * 18 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 26 26 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 27 27 H 1.07997 * 120.03602 * 0.02562 * 7 6 5 28 28 H 1.07998 * 119.96819 * 180.20052 * 8 7 6 29 29 H 1.08001 * 119.96940 * 180.02562 * 11 9 8 30 30 H 1.07996 * 120.03081 * 179.97438 * 12 11 9 31 31 H 0.97006 * 119.99921 * 94.99902 * 13 2 1 32 32 H 0.96997 * 119.99796 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 16 3.8540 -0.7206 -1.2495 6 6 4.2505 -1.5798 -2.7359 7 6 3.2353 -2.0601 -3.5543 8 6 3.5491 -2.7292 -4.7207 9 6 4.8731 -2.9305 -5.0698 10 17 5.2637 -3.7785 -6.5335 11 6 5.8864 -2.4576 -4.2545 12 6 5.5789 -1.7835 -3.0891 13 7 2.0183 -0.6905 1.1962 14 6 2.1491 -0.0074 2.3758 15 1 1.8926 1.0406 2.4241 16 6 2.6113 -0.6619 3.5094 17 7 2.9234 -1.9392 3.4505 18 14 2.7890 0.2698 5.1186 19 1 2.3752 1.6824 4.9211 20 1 1.9278 -0.3587 6.1522 21 1 4.2058 0.2269 5.5615 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.6767 -1.7489 -1.2491 26 1 1.6768 -0.2074 -2.1391 27 1 2.2020 -1.9068 -3.2803 28 1 2.7606 -3.0999 -5.3588 29 1 6.9186 -2.6158 -4.5298 30 1 6.3700 -1.4150 -2.4530 31 1 2.2490 -1.6317 1.1527 32 1 3.2468 -2.3964 4.2425 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172872119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:42 Heat of formation + Delta-G solvation = 20.657649 kcal Electronic energy + Delta-G solvation = -15543.106622 eV Core-core repulsion = 12848.638520 eV Total energy + Delta-G solvation = -2694.468102 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.10486 -36.51332 -36.06036 -32.38416 -31.23716 -30.78639 -28.92052 -26.93858 -23.78199 -22.79373 -22.78295 -20.16145 -17.88136 -17.22760 -16.50431 -15.51892 -15.06646 -14.78917 -14.19090 -14.05534 -13.72673 -13.65333 -13.37417 -12.57259 -12.49715 -12.26652 -11.83551 -11.73802 -11.66790 -11.02081 -10.92881 -10.84219 -10.73323 -10.47938 -10.04581 -9.84737 -9.66991 -9.41950 -9.17509 -8.95737 -7.14392 -6.95139 -5.77533 -3.07553 0.98400 1.19580 1.73794 2.07970 2.76480 3.42713 3.48379 3.48807 3.50519 4.56412 4.66637 4.75762 5.16414 5.17965 5.22309 5.31671 5.44954 5.52447 5.75951 5.81529 5.85829 5.96226 6.08357 6.13083 6.18748 6.20804 6.47717 6.61642 6.67554 6.90519 7.68458 8.39010 9.51433 10.04672 10.40575 11.44598 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.034267 B = 0.003745 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.921579 B = 7473.988731 C = 7947.830618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.186 3.814 3 H 0.057 0.943 4 C -0.119 4.119 5 S -0.050 6.050 6 C -0.083 4.083 7 C -0.130 4.130 8 C -0.089 4.089 9 C -0.054 4.054 10 Cl -0.081 7.081 11 C -0.090 4.090 12 C -0.096 4.096 13 N -0.720 5.720 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.009 4.009 17 N -0.928 5.928 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.291 1.291 22 H 0.049 0.951 23 H 0.038 0.962 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.387 0.613 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 -0.620 -17.842 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.075 3.925 3 H 0.075 0.925 4 C -0.268 4.268 5 S 0.199 5.801 6 C -0.197 4.197 7 C -0.155 4.155 8 C -0.109 4.109 9 C -0.084 4.084 10 Cl -0.052 7.052 11 C -0.111 4.111 12 C -0.120 4.120 13 N -0.362 5.362 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.205 4.205 17 N -0.576 5.576 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.218 1.218 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.221 0.779 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.595 -0.010 -16.852 17.050 hybrid contribution -0.685 -0.613 -0.197 0.940 sum 1.910 -0.623 -17.048 17.166 Atomic orbital electron populations 1.22415 0.97989 1.01248 1.00484 1.19983 0.92344 0.95553 0.84663 0.92499 1.24282 0.93929 1.05110 1.03482 1.86474 1.06997 1.66893 1.19687 1.22452 0.96501 1.01031 0.99737 1.21181 0.98994 1.00538 0.94808 1.20906 0.94600 0.98528 0.96874 1.20806 0.94643 1.02374 0.90575 1.98351 1.94512 1.76567 1.35795 1.20941 0.98780 0.97581 0.93781 1.20735 0.94883 0.99776 0.96632 1.42458 1.77860 1.10857 1.05031 1.19223 1.37011 0.93870 0.87106 0.91143 1.24725 1.01886 0.95935 0.97999 1.69675 1.50529 1.08608 1.28764 0.86156 0.77353 0.78815 0.84076 1.20565 1.21917 1.21824 0.93220 0.94268 0.92023 0.89622 0.89738 0.84994 0.85044 0.84807 0.84585 0.77867 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.49 37.16 0.35 -2.30 16 2 C 0.19 3.48 2.94 -67.94 -0.20 3.28 16 3 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 4 C -0.12 -1.84 3.89 37.15 0.14 -1.69 16 5 S -0.05 -0.84 21.51 -107.50 -2.31 -3.15 16 6 C -0.08 -1.19 6.11 -39.05 -0.24 -1.43 16 7 C -0.13 -1.66 9.36 -39.37 -0.37 -2.03 16 8 C -0.09 -1.02 9.82 -39.58 -0.39 -1.41 16 9 C -0.05 -0.63 6.32 -39.47 -0.25 -0.88 16 10 Cl -0.08 -0.85 28.95 -51.86 -1.50 -2.35 16 11 C -0.09 -1.04 9.82 -39.58 -0.39 -1.43 16 12 C -0.10 -1.24 9.79 -39.37 -0.39 -1.63 16 13 N -0.72 -17.30 4.66 -53.43 -0.25 -17.55 16 14 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 18 Si 0.90 22.15 29.55 -169.99 -5.02 17.12 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.09 1.30 7.73 -51.92 -0.40 0.90 16 26 H 0.08 1.08 7.76 -51.92 -0.40 0.67 16 27 H 0.13 1.52 5.88 -52.49 -0.31 1.21 16 28 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.39 10.02 7.80 -40.82 -0.32 9.70 16 32 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 304.02 15.07 4.58 4.58 Total: -1.00 -29.24 304.02 -9.68 -38.92 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -3.93 Total: 5.87 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.97 Total: -16.52 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.48 Total: -44.47 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -2.31 Total: -3.15 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.24 -9.68 -38.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172872119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.577 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds