Wall clock time and date at job start Mon Mar 30 2020 01:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46926 * 2 1 4 4 C 1.53005 * 109.47521 * 120.00079 * 2 1 3 5 5 S 1.81397 * 109.47392 * 185.00310 * 4 2 1 6 6 C 1.76199 * 103.00099 * 179.97438 * 5 4 2 7 7 C 1.38958 * 120.06797 * 180.02562 * 6 5 4 8 8 C 1.38085 * 119.93244 * 180.26013 * 7 6 5 9 9 C 1.38400 * 120.06422 * 359.46209 * 8 7 6 10 10 Cl 1.73602 * 119.93151 * 180.24131 * 9 8 7 11 11 C 1.38394 * 120.13576 * 0.51321 * 9 8 7 12 12 C 1.38084 * 120.06743 * 359.77045 * 11 9 8 13 13 N 1.46497 * 109.47360 * 240.00180 * 2 1 3 14 14 C 1.36938 * 119.99981 * 84.99877 * 13 2 1 15 15 H 1.08001 * 120.00241 * 0.02562 * 14 13 2 16 16 C 1.38817 * 119.99928 * 180.02562 * 14 13 2 17 17 N 1.31621 * 119.99855 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99960 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47083 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47354 * 119.99819 * 18 16 14 21 21 H 1.48505 * 109.46956 * 239.99909 * 18 16 14 22 22 H 1.08996 * 109.47370 * 299.99760 * 1 2 3 23 23 H 1.09001 * 109.47354 * 60.00236 * 1 2 3 24 24 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46778 * 65.00018 * 4 2 1 26 26 H 1.09005 * 109.46433 * 305.00259 * 4 2 1 27 27 H 1.08002 * 120.03094 * 359.97438 * 7 6 5 28 28 H 1.07998 * 119.96932 * 179.69930 * 8 7 6 29 29 H 1.08007 * 119.96920 * 179.74397 * 11 9 8 30 30 H 1.07998 * 120.03581 * 179.97438 * 12 11 9 31 31 H 0.97002 * 119.99904 * 264.99748 * 13 2 1 32 32 H 0.96998 * 119.99566 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 16 3.8479 -0.5932 1.3257 6 6 4.2450 -1.4658 2.8040 7 6 5.5693 -1.5855 3.2074 8 6 5.8778 -2.2746 4.3636 9 6 4.8686 -2.8362 5.1262 10 17 5.2598 -3.6965 6.5825 11 6 3.5486 -2.7183 4.7273 12 6 3.2344 -2.0354 3.5690 13 7 2.0183 -0.6905 -1.1961 14 6 2.1491 -0.0074 -2.3757 15 1 1.8926 1.0406 -2.4241 16 6 2.6114 -0.6619 -3.5093 17 7 2.9245 -1.9389 -3.4501 18 14 2.7891 0.2699 -5.1185 19 1 2.3742 1.6820 -4.9213 20 1 4.2058 0.2270 -5.5615 21 1 1.9280 -0.3589 -6.1522 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7715 1.2055 26 1 1.6054 -0.2617 2.1370 27 1 6.3569 -1.1439 2.6148 28 1 6.9072 -2.3721 4.6751 29 1 2.7635 -3.1611 5.3223 30 1 2.2042 -1.9440 3.2579 31 1 2.2491 -1.6317 -1.1526 32 1 3.2478 -2.3961 -4.2422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172872120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:44 Heat of formation + Delta-G solvation = 20.523770 kcal Electronic energy + Delta-G solvation = -15530.001357 eV Core-core repulsion = 12835.527450 eV Total energy + Delta-G solvation = -2694.473907 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.049 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.11632 -36.52115 -36.05952 -32.38445 -31.24689 -30.79786 -28.92267 -26.94010 -23.78252 -22.80780 -22.79118 -20.16788 -17.88884 -17.23376 -16.51273 -15.52696 -15.07424 -14.80405 -14.19481 -14.04422 -13.73828 -13.65873 -13.37524 -12.55984 -12.52587 -12.26942 -11.84504 -11.74978 -11.67334 -11.02754 -10.93742 -10.84466 -10.72997 -10.48362 -10.04831 -9.85382 -9.68378 -9.43172 -9.18483 -8.95849 -7.15423 -6.96160 -5.77677 -3.07640 0.97259 1.18623 1.72298 2.07155 2.74626 3.42695 3.47756 3.48405 3.50547 4.56366 4.65672 4.74858 5.15599 5.18108 5.21676 5.30672 5.43933 5.52159 5.76240 5.80806 5.85497 5.95250 6.08495 6.12154 6.17671 6.20418 6.47557 6.60514 6.67672 6.90320 7.68423 8.38938 9.51320 10.04633 10.40448 11.44550 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.034093 B = 0.003717 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.086157 B = 7530.355657 C = 7967.374037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.186 3.814 3 H 0.057 0.943 4 C -0.117 4.117 5 S -0.056 6.056 6 C -0.081 4.081 7 C -0.096 4.096 8 C -0.090 4.090 9 C -0.054 4.054 10 Cl -0.081 7.081 11 C -0.088 4.088 12 C -0.130 4.130 13 N -0.720 5.720 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.009 4.009 17 N -0.928 5.928 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 H 0.038 0.962 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.386 0.614 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -0.459 18.008 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.075 3.925 3 H 0.075 0.925 4 C -0.266 4.266 5 S 0.194 5.806 6 C -0.195 4.195 7 C -0.120 4.120 8 C -0.111 4.111 9 C -0.084 4.084 10 Cl -0.052 7.052 11 C -0.109 4.109 12 C -0.155 4.155 13 N -0.362 5.362 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.206 4.206 17 N -0.576 5.576 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.219 1.219 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.221 0.779 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.556 0.222 17.062 17.254 hybrid contribution -0.668 -0.709 0.136 0.984 sum 1.888 -0.487 17.198 17.308 Atomic orbital electron populations 1.22410 0.97947 1.01255 1.00499 1.19977 0.92333 0.95562 0.84652 0.92487 1.24278 0.93714 1.05240 1.03414 1.86374 1.07992 1.64815 1.21464 1.22401 0.96548 1.00902 0.99696 1.20734 0.94881 0.99958 0.96462 1.20940 0.98786 0.97127 0.94227 1.20811 0.94721 1.01897 0.90934 1.98351 1.94482 1.76013 1.36340 1.20908 0.94646 0.98721 0.96615 1.21184 0.99058 0.99958 0.95267 1.42444 1.77952 1.10793 1.05026 1.19223 1.36966 0.93871 0.87101 0.91139 1.24726 1.01898 0.95944 0.98013 1.69676 1.50565 1.08638 1.28764 0.86152 0.77352 0.78813 0.84062 1.20561 1.21822 1.21924 0.94255 0.92016 0.93211 0.89557 0.89716 0.84587 0.84793 0.85015 0.84964 0.77939 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.49 37.16 0.35 -2.30 16 2 C 0.19 3.49 2.89 -67.93 -0.20 3.29 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 C -0.12 -1.81 3.86 37.16 0.14 -1.67 16 5 S -0.06 -0.93 21.66 -107.50 -2.33 -3.26 16 6 C -0.08 -1.16 6.11 -39.05 -0.24 -1.40 16 7 C -0.10 -1.23 9.79 -39.37 -0.39 -1.62 16 8 C -0.09 -1.03 9.82 -39.58 -0.39 -1.42 16 9 C -0.05 -0.62 6.32 -39.46 -0.25 -0.87 16 10 Cl -0.08 -0.84 28.95 -51.86 -1.50 -2.34 16 11 C -0.09 -1.02 9.82 -39.58 -0.39 -1.41 16 12 C -0.13 -1.65 9.36 -39.37 -0.37 -2.02 16 13 N -0.72 -17.32 4.83 -53.42 -0.26 -17.57 16 14 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 17 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 18 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.09 1.33 7.75 -51.93 -0.40 0.93 16 26 H 0.08 1.08 7.75 -51.92 -0.40 0.68 16 27 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.13 1.52 5.88 -52.49 -0.31 1.21 16 31 H 0.39 10.01 7.80 -40.82 -0.32 9.69 16 32 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 304.25 15.07 4.58 4.58 Total: -1.00 -29.27 304.25 -9.70 -38.97 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.93 Total: 5.85 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.96 Total: -16.41 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.47 Total: -44.54 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.33 Total: -3.26 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.27 -9.70 -38.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172872120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.496 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds