Wall clock time and date at job start Mon Mar 30 2020 01:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99957 * 2 1 4 4 H 1.48502 * 109.46790 * 270.00281 * 3 2 1 5 5 H 1.48497 * 109.46998 * 29.99953 * 3 2 1 6 6 H 1.48491 * 109.46982 * 150.00134 * 3 2 1 7 7 C 1.37877 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99336 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00354 * 180.02562 * 7 2 1 10 10 O 1.42101 * 106.40301 * 66.45354 * 9 7 2 11 11 O 1.42102 * 106.40092 * 293.53909 * 9 7 2 12 12 N 1.65598 * 107.22001 * 179.97438 * 9 7 2 13 13 C 1.38890 * 119.99820 * 67.76307 * 12 9 7 14 14 C 1.39209 * 120.60689 * 324.63945 * 13 12 9 15 15 N 1.31568 * 120.75494 * 180.29080 * 14 13 12 16 16 C 1.31935 * 122.18267 * 359.71968 * 15 14 13 17 17 C 1.37917 * 121.13616 * 0.02562 * 16 15 14 18 18 C 1.39975 * 119.09450 * 359.97438 * 17 16 15 19 19 C 1.47727 * 120.98036 * 180.02562 * 18 17 16 20 20 N 1.34780 * 120.00281 * 0.02562 * 19 18 17 21 21 O 1.21572 * 120.00097 * 180.02562 * 19 18 17 22 22 H 0.97000 * 120.00097 * 359.97438 * 1 2 3 23 23 H 0.96995 * 120.00182 * 247.76850 * 12 9 7 24 24 H 1.07996 * 119.62104 * 359.97438 * 14 13 12 25 25 H 1.08005 * 119.42983 * 180.02562 * 16 15 14 26 26 H 1.08002 * 120.45292 * 180.02562 * 17 16 15 27 27 H 0.96991 * 120.00261 * 179.97438 * 20 19 18 28 28 H 0.97001 * 119.99497 * 359.72710 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7666 -1.1940 0.0001 10 8 4.1674 -0.6503 1.2503 11 8 4.1683 -0.6487 -1.2491 12 7 4.2568 -2.7757 0.0000 13 6 4.0280 -3.5735 -1.1137 14 6 2.8712 -3.4171 -1.8721 15 7 2.6488 -4.1750 -2.9242 16 6 3.5001 -5.1051 -3.3128 17 6 4.6751 -5.3283 -2.6260 18 6 4.9627 -4.5503 -1.4985 19 6 6.2092 -4.7536 -0.7321 20 7 7.0897 -5.6990 -1.1160 21 8 6.4408 -4.0680 0.2448 22 1 -0.4850 0.8400 0.0004 23 1 4.7037 -3.1451 0.7776 24 1 2.1456 -2.6684 -1.5905 25 1 3.2729 -5.7019 -4.1839 26 1 5.3643 -6.0923 -2.9541 27 1 7.9083 -5.8322 -0.6131 28 1 6.9030 -6.2487 -1.8931 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192939237.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:36 Heat of formation + Delta-G solvation = -105.724091 kcal Electronic energy + Delta-G solvation = -18926.350803 eV Core-core repulsion = 15682.152870 eV Total energy + Delta-G solvation = -3244.197933 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.046 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.82305 -39.91750 -37.91129 -36.73302 -36.68716 -35.29457 -35.07297 -32.90972 -30.58769 -28.72545 -26.02657 -24.38438 -22.33426 -21.07981 -20.02977 -19.23279 -18.88878 -18.64537 -18.04485 -17.26105 -16.69988 -16.47930 -16.12373 -16.00205 -15.59701 -15.18440 -15.04999 -14.78033 -14.62353 -14.10974 -13.51223 -13.16134 -13.03616 -12.89817 -12.67719 -12.51758 -11.89462 -11.59556 -11.37221 -11.20613 -10.93134 -10.69422 -10.48613 -9.50529 -9.01257 -7.61309 -0.41212 -0.19588 0.10631 1.02672 1.12109 1.18961 1.77360 1.86156 2.19665 2.33302 2.36615 2.76141 3.12251 3.50069 3.65204 3.71490 3.76146 3.90606 4.15416 4.45380 4.72938 4.85547 5.01101 5.31097 5.53433 5.75256 5.92437 6.02148 6.32256 6.44740 6.92483 7.20519 8.14775 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.027217 B = 0.007759 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.521383 B = 3607.825960 C = 4311.840049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.119 3.881 3 Si 0.818 3.182 4 H -0.236 1.236 5 H -0.213 1.213 6 H -0.237 1.237 7 C -1.033 5.033 8 H 0.123 0.877 9 S 2.679 3.321 10 O -1.018 7.018 11 O -1.015 7.015 12 N -1.033 6.033 13 C 0.162 3.838 14 C 0.025 3.975 15 N -0.455 5.455 16 C 0.062 3.938 17 C -0.085 4.085 18 C -0.149 4.149 19 C 0.566 3.434 20 N -0.813 5.813 21 O -0.578 6.578 22 H 0.295 0.705 23 H 0.433 0.567 24 H 0.164 0.836 25 H 0.212 0.788 26 H 0.204 0.796 27 H 0.418 0.582 28 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.521 -14.934 -7.146 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.100 4.100 3 Si 0.635 3.365 4 H -0.159 1.159 5 H -0.135 1.135 6 H -0.160 1.160 7 C -1.167 5.167 8 H 0.141 0.859 9 S 2.780 3.220 10 O -1.008 7.008 11 O -1.004 7.004 12 N -0.783 5.783 13 C 0.058 3.942 14 C -0.135 4.135 15 N -0.165 5.165 16 C -0.095 4.095 17 C -0.105 4.105 18 C -0.165 4.165 19 C 0.351 3.649 20 N -0.379 5.379 21 O -0.458 6.458 22 H 0.106 0.894 23 H 0.275 0.725 24 H 0.181 0.819 25 H 0.228 0.772 26 H 0.221 0.779 27 H 0.251 0.749 28 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 10.120 -13.366 -7.077 18.198 hybrid contribution 0.421 0.178 1.024 1.122 sum 10.541 -13.188 -6.053 17.936 Atomic orbital electron populations 1.69972 1.07084 1.30778 1.38717 1.24994 0.95588 1.00910 0.88533 0.87591 0.82773 0.83331 0.82820 1.15918 1.13492 1.15952 1.30721 1.15976 1.02525 1.67454 0.85925 1.01304 0.76947 0.70890 0.72810 1.93458 1.85588 1.76185 1.45553 1.93412 1.85011 1.76298 1.45726 1.53159 1.72303 1.29956 1.22869 1.18771 0.93984 0.92872 0.88524 1.23597 0.95014 1.01147 0.93772 1.67522 1.32882 1.04306 1.11742 1.23586 0.90263 0.94776 1.00902 1.22767 0.98727 0.97914 0.91131 1.20396 0.95055 1.01150 0.99900 1.18036 0.83472 0.80266 0.83091 1.43341 1.23189 1.36803 1.34564 1.90731 1.77545 1.48264 1.29300 0.89402 0.72544 0.81877 0.77178 0.77867 0.74855 0.74452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.51 13.96 21.45 0.30 -47.21 15 2 C 0.12 6.79 5.47 84.65 0.46 7.25 15 3 Si 0.82 41.20 26.54 68.60 1.82 43.02 15 4 H -0.24 -11.52 7.11 99.48 0.71 -10.81 15 5 H -0.21 -9.35 7.11 99.48 0.71 -8.64 15 6 H -0.24 -12.52 5.61 99.48 0.56 -11.97 15 7 C -1.03 -58.30 8.20 67.73 0.56 -57.74 15 8 H 0.12 6.93 7.01 -2.91 -0.02 6.91 15 9 S 2.68 142.56 3.88 -56.49 -0.22 142.34 15 10 O -1.02 -58.00 16.02 -128.00 -2.05 -60.05 15 11 O -1.01 -56.77 16.33 -128.00 -2.09 -58.86 15 12 N -1.03 -45.83 5.11 -50.65 -0.26 -46.09 15 13 C 0.16 6.35 6.18 38.82 0.24 6.59 15 14 C 0.03 1.05 10.23 84.97 0.87 1.92 15 15 N -0.46 -15.52 10.32 -195.43 -2.02 -17.54 15 16 C 0.06 1.33 11.15 84.60 0.94 2.28 15 17 C -0.09 -1.49 9.61 22.61 0.22 -1.27 15 18 C -0.15 -4.25 5.92 -19.78 -0.12 -4.37 15 19 C 0.57 14.94 8.06 86.75 0.70 15.64 15 20 N -0.81 -10.14 8.83 -175.67 -1.55 -11.69 15 21 O -0.58 -20.86 14.94 -3.94 -0.06 -20.92 15 22 H 0.30 15.04 8.31 -92.71 -0.77 14.27 15 23 H 0.43 18.16 6.73 -96.75 -0.65 17.51 15 24 H 0.16 7.82 4.44 -2.91 -0.01 7.80 15 25 H 0.21 2.31 8.06 -2.91 -0.02 2.28 15 26 H 0.20 0.77 6.53 -2.91 -0.02 0.75 15 27 H 0.42 4.04 8.93 -92.72 -0.83 3.21 15 28 H 0.42 1.58 6.97 -92.71 -0.65 0.94 15 Total: -1.00 -81.20 257.53 -3.25 -84.45 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -1.00 Total: 22.27 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 3.87 Total: -29.71 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -3.53 Total: -122.53 kcal Atomic # 8 Polarization: -135.64 SS G_CDS: -4.20 Total: -139.84 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.82 Total: 43.02 kcal Atomic # 16 Polarization: 142.56 SS G_CDS: -0.22 Total: 142.34 kcal Total: -81.20 -3.25 -84.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939237.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.272 kcal (2) G-P(sol) polarization free energy of solvation -81.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds