Wall clock time and date at job start Mon Mar 30 2020 00:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.32927 * 119.77594 * 260.27757 * 3 2 1 5 5 C 1.31404 * 121.70937 * 179.70532 * 4 3 2 6 6 C 1.38999 * 121.07400 * 0.57857 * 5 4 3 7 7 F 1.35105 * 120.28007 * 179.74008 * 6 5 4 8 8 C 1.38574 * 119.43884 * 359.71297 * 6 5 4 9 9 C 1.39320 * 118.42508 * 0.02562 * 8 6 5 10 10 N 1.39029 * 120.54822 * 179.97438 * 9 8 6 11 11 S 1.65596 * 119.99620 * 35.01930 * 10 9 8 12 12 O 1.42103 * 106.40205 * 178.54222 * 11 10 9 13 13 O 1.42094 * 106.40520 * 311.46176 * 11 10 9 14 14 C 1.76201 * 107.21776 * 65.00112 * 11 10 9 15 15 H 1.08002 * 120.00327 * 0.02562 * 14 11 10 16 16 C 1.37883 * 119.99760 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00197 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99837 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46970 * 59.99928 * 18 16 14 20 20 H 1.48494 * 109.47281 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47029 * 300.00448 * 18 16 14 22 22 H 1.08005 * 119.46266 * 180.29344 * 5 4 3 23 23 H 1.08002 * 120.78929 * 180.02562 * 8 6 5 24 24 H 0.96997 * 119.99622 * 215.02322 * 10 9 8 25 25 H 0.97001 * 120.00007 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2280 0.1958 1.1372 5 6 4.5413 0.1982 1.1819 6 6 5.2986 0.0073 0.0321 7 9 6.6481 0.0180 0.0956 8 6 4.6577 -0.1947 -1.1799 9 6 3.2647 -0.1984 -1.2009 10 7 2.5765 -0.3965 -2.3925 11 16 3.1873 -1.4214 -3.5408 12 8 2.2489 -1.4335 -4.6079 13 8 4.5526 -1.0661 -3.7105 14 6 3.1772 -3.0428 -2.8510 15 1 2.8109 -3.2005 -1.8473 16 6 3.6360 -4.1105 -3.5931 17 7 4.0816 -3.9187 -4.8155 18 14 3.6261 -5.8293 -2.8616 19 1 2.2344 -6.2091 -2.5089 20 1 4.1662 -6.7928 -3.8541 21 1 4.4701 -5.8523 -1.6399 22 1 5.0404 0.3556 2.1267 23 1 5.2246 -0.3457 -2.0866 24 1 1.7386 0.0658 -2.5512 25 1 4.4047 -4.6698 -5.3374 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952172.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:58 Heat of formation + Delta-G solvation = -88.303255 kcal Electronic energy + Delta-G solvation = -18223.024056 eV Core-core repulsion = 14856.121241 eV Total energy + Delta-G solvation = -3366.902814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.021 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.09914 -41.63741 -37.82587 -37.72582 -36.89162 -36.40507 -35.26130 -33.02404 -31.06096 -28.36650 -25.97677 -24.73018 -21.36000 -20.81797 -19.97150 -19.65253 -18.71015 -17.97292 -17.25231 -17.09853 -16.84762 -16.08363 -15.96605 -15.71741 -15.56356 -15.15475 -14.37253 -14.10642 -14.02357 -13.94850 -13.71485 -13.50705 -13.13420 -13.06166 -12.78121 -12.63031 -12.43569 -12.35883 -11.29094 -11.14809 -11.01323 -10.61601 -9.72861 -8.84612 -7.60197 -0.79890 -0.26832 0.04593 1.29889 1.33751 1.34291 1.48016 1.55128 2.12275 2.24700 2.36964 2.50990 2.58127 2.82309 3.33189 3.46157 3.61474 3.75726 3.91569 4.20005 4.33007 4.63330 4.97732 5.19325 5.32683 5.73454 5.78550 6.13426 6.41125 6.69448 8.12000 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.008108 C = 0.007350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.234530 B = 3452.494138 C = 3808.703485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.286 3.714 3 C 0.133 3.867 4 N -0.403 5.403 5 C 0.082 3.918 6 C 0.124 3.876 7 F -0.112 7.112 8 C -0.181 4.181 9 C 0.210 3.790 10 N -1.050 6.050 11 S 2.707 3.293 12 O -1.022 7.022 13 O -1.006 7.006 14 C -1.035 5.035 15 H 0.120 0.880 16 C 0.080 3.920 17 N -0.884 5.884 18 Si 0.984 3.016 19 H -0.256 1.256 20 H -0.261 1.261 21 H -0.247 1.247 22 H 0.229 0.771 23 H 0.181 0.819 24 H 0.430 0.570 25 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.644 5.203 11.415 13.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.031 4.031 3 C -0.008 4.008 4 N -0.112 5.112 5 C -0.083 4.083 6 C 0.101 3.899 7 F -0.090 7.090 8 C -0.210 4.210 9 C 0.104 3.896 10 N -0.794 5.794 11 S 2.810 3.190 12 O -1.012 7.012 13 O -0.996 6.996 14 C -1.169 5.169 15 H 0.138 0.862 16 C -0.135 4.135 17 N -0.514 5.514 18 Si 0.802 3.198 19 H -0.180 1.180 20 H -0.185 1.185 21 H -0.170 1.170 22 H 0.246 0.754 23 H 0.198 0.802 24 H 0.267 0.733 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.907 5.500 11.024 12.467 hybrid contribution 0.533 -1.038 -0.728 1.375 sum 2.440 4.463 10.296 11.484 Atomic orbital electron populations 1.81234 1.11874 1.08889 1.07142 1.24766 0.91488 0.93407 0.93414 1.16125 0.86009 1.09751 0.88870 1.67607 1.09972 1.09157 1.24438 1.23510 0.87358 0.98514 0.98921 1.18786 0.78479 0.98445 0.94184 1.91587 1.27604 1.92960 1.96850 1.22637 0.93188 1.02804 1.02362 1.17951 0.90750 0.95312 0.85550 1.53628 1.35965 1.60165 1.29686 1.00729 0.72177 0.74780 0.71351 1.93371 1.65078 1.88485 1.54261 1.93251 1.36071 1.85235 1.85003 1.30640 1.57772 1.14863 1.13656 0.86229 1.25863 0.88196 1.05894 0.93514 1.69931 1.34175 1.37255 1.10059 0.85239 0.80419 0.74559 0.79608 1.17965 1.18456 1.17005 0.75445 0.80202 0.73255 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -13.72 18.54 19.00 0.35 -13.37 15 2 C 0.29 8.79 14.62 88.33 1.29 10.08 15 3 C 0.13 3.81 6.61 40.72 0.27 4.08 15 4 N -0.40 -9.71 10.27 -188.19 -1.93 -11.65 15 5 C 0.08 1.54 11.16 84.94 0.95 2.49 15 6 C 0.12 2.97 7.34 22.53 0.17 3.14 15 7 F -0.11 -2.58 17.28 44.97 0.78 -1.80 15 8 C -0.18 -5.70 9.30 22.61 0.21 -5.49 15 9 C 0.21 6.79 6.35 38.75 0.25 7.04 15 10 N -1.05 -38.50 5.47 -50.68 -0.28 -38.78 15 11 S 2.71 132.16 4.86 -56.49 -0.27 131.88 15 12 O -1.02 -56.79 18.02 -128.00 -2.31 -59.09 15 13 O -1.01 -51.67 14.73 -128.00 -1.89 -53.56 15 14 C -1.04 -52.68 9.67 67.74 0.66 -52.02 15 15 H 0.12 5.54 7.81 -2.91 -0.02 5.52 15 16 C 0.08 4.16 5.46 84.66 0.46 4.62 15 17 N -0.88 -48.91 13.19 21.45 0.28 -48.63 15 18 Si 0.98 38.79 29.54 68.60 2.03 40.81 15 19 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 20 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 21 H -0.25 -9.07 7.11 99.48 0.71 -8.36 15 22 H 0.23 2.03 8.06 -2.91 -0.02 2.00 15 23 H 0.18 6.69 5.13 -2.91 -0.01 6.68 15 24 H 0.43 13.76 8.31 -96.75 -0.80 12.96 15 25 H 0.30 15.08 8.31 -92.71 -0.77 14.31 15 Total: -1.00 -66.59 261.35 1.50 -65.09 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.49 Total: 15.15 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 4.25 Total: -26.07 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -1.57 Total: -112.42 kcal Atomic # 8 Polarization: -108.46 SS G_CDS: -4.19 Total: -112.65 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 16 Polarization: 132.16 SS G_CDS: -0.27 Total: 131.88 kcal Total: -66.59 1.50 -65.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952172.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.210 kcal (2) G-P(sol) polarization free energy of solvation -66.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds