Wall clock time and date at job start Mon Mar 30 2020 00:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47272 * 2 1 4 4 O 1.42898 * 109.46804 * 239.99787 * 2 1 3 5 5 C 1.42904 * 114.00044 * 90.24574 * 4 2 1 6 6 C 1.53005 * 109.47140 * 215.44577 * 5 4 2 7 7 Br 1.96598 * 109.47248 * 65.36153 * 6 5 4 8 8 C 1.50691 * 109.47287 * 95.44198 * 5 4 2 9 9 N 1.27949 * 119.99992 * 105.00065 * 8 5 4 10 10 Si 1.86800 * 120.00356 * 285.00334 * 8 5 4 11 11 H 1.48507 * 109.46907 * 359.97438 * 10 8 5 12 12 H 1.48497 * 109.47484 * 119.99644 * 10 8 5 13 13 H 1.48499 * 109.47472 * 240.00234 * 10 8 5 14 14 C 1.50703 * 109.46867 * 120.00442 * 2 1 3 15 15 C 1.38312 * 125.74146 * 244.68767 * 14 2 1 16 16 C 1.47152 * 108.13959 * 179.85205 * 15 14 2 17 17 C 1.35499 * 107.60634 * 0.41404 * 16 15 14 18 18 C 1.38307 * 125.75102 * 64.99694 * 14 2 1 19 19 H 1.08005 * 125.93053 * 0.02562 * 18 14 2 20 20 H 1.08997 * 109.47174 * 174.31308 * 1 2 3 21 21 H 1.08996 * 109.47101 * 294.31486 * 1 2 3 22 22 H 1.08995 * 109.46892 * 54.31115 * 1 2 3 23 23 H 1.09007 * 109.46778 * 335.44178 * 5 4 2 24 24 H 1.09000 * 109.46421 * 185.36482 * 6 5 4 25 25 H 1.09000 * 109.47098 * 305.36204 * 6 5 4 26 26 H 0.97004 * 119.99753 * 180.02562 * 9 8 5 27 27 H 1.07997 * 125.93145 * 359.97438 * 15 14 2 28 28 H 1.07999 * 126.19695 * 180.17099 * 16 15 14 29 29 H 1.07996 * 126.20118 * 179.75533 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2053 0.1838 -2.2925 6 6 1.8435 -0.5669 -3.5757 7 35 -0.0802 -0.9727 -3.5773 8 6 3.6495 0.6101 -2.3502 9 7 4.4347 0.0939 -3.2185 10 14 4.2935 1.8922 -1.1539 11 1 3.1931 2.3298 -0.2577 12 1 5.3898 1.3055 -0.3422 13 1 4.8090 3.0610 -1.9110 14 6 2.0323 -0.7105 1.2304 15 6 2.7541 -0.1326 2.2591 16 6 3.0392 -1.1732 3.2597 17 6 2.4992 -2.3321 2.8111 18 6 1.8544 -2.0515 1.5185 19 1 1.3330 -2.7685 0.9015 20 1 -0.3633 -1.0226 -0.1018 21 1 -0.3633 0.4231 0.9365 22 1 -0.3633 0.5995 -0.8346 23 1 1.5701 1.0643 -2.1953 24 1 2.0849 0.0526 -4.4393 25 1 2.4108 -1.4963 -3.6252 26 1 5.3645 0.3681 -3.2554 27 1 3.0546 0.9030 2.3185 28 1 3.5838 -1.0385 4.1826 29 1 2.5355 -3.2885 3.3114 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224442741.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:40 Heat of formation + Delta-G solvation = -42.666218 kcal Electronic energy + Delta-G solvation = -13975.784113 eV Core-core repulsion = 11523.670864 eV Total energy + Delta-G solvation = -2452.113250 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 272.015 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.95796 -38.12453 -36.38384 -33.22251 -31.86751 -29.43660 -27.85655 -26.88250 -25.10488 -23.39986 -20.90416 -19.34680 -18.74102 -17.65260 -17.46488 -16.67254 -16.31090 -14.91477 -14.83311 -14.54063 -13.88750 -13.58949 -13.41991 -12.90690 -12.86221 -12.47030 -12.26160 -12.15491 -11.97334 -11.87616 -11.72293 -11.60541 -11.04848 -10.82698 -10.67047 -10.61167 -9.80969 -7.89447 -7.20274 0.62550 0.78829 1.03483 1.30502 1.50931 1.96884 2.52509 2.78971 3.20827 3.43550 3.81801 4.04397 4.23916 4.31948 4.57734 4.63852 4.75299 4.88786 4.94563 5.02078 5.07848 5.20735 5.26607 5.44489 5.46243 6.16042 6.32240 6.52883 6.76368 6.85340 7.44335 7.56403 Molecular weight = 272.02amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.009595 C = 0.007061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.797084 B = 2917.395854 C = 3964.216704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.155 3.845 3 H 0.060 0.940 4 O -0.366 6.366 5 C 0.102 3.898 6 C -0.046 4.046 7 Br -0.173 7.173 8 C -0.016 4.016 9 N -0.617 5.617 10 Si 0.936 3.064 11 H -0.241 1.241 12 H -0.271 1.271 13 H -0.204 1.204 14 C -0.161 4.161 15 C -0.334 4.334 16 C -0.266 4.266 17 C -0.274 4.274 18 C -0.306 4.306 19 H 0.068 0.932 20 H 0.046 0.954 21 H 0.054 0.946 22 H 0.074 0.926 23 H 0.106 0.894 24 H 0.136 0.864 25 H 0.100 0.900 26 H 0.348 0.652 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 8.128 -16.266 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.099 3.901 3 H 0.078 0.922 4 O -0.283 6.283 5 C 0.042 3.958 6 C -0.161 4.161 7 Br -0.093 7.093 8 C -0.267 4.267 9 N -0.234 5.234 10 Si 0.753 3.247 11 H -0.165 1.165 12 H -0.196 1.196 13 H -0.126 1.126 14 C -0.162 4.162 15 C -0.352 4.352 16 C -0.284 4.284 17 C -0.293 4.293 18 C -0.325 4.325 19 H 0.086 0.914 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.124 0.876 24 H 0.154 0.846 25 H 0.119 0.881 26 H 0.166 0.834 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.256 7.691 -16.457 18.305 hybrid contribution 0.999 0.055 0.933 1.368 sum -1.257 7.746 -15.524 17.394 Atomic orbital electron populations 1.22071 0.94948 1.01895 1.01476 1.20567 0.93541 0.93674 0.82307 0.92216 1.88198 1.86003 1.34318 1.19810 1.21591 0.92080 0.94761 0.87335 1.24749 0.86262 1.05420 0.99714 1.97339 1.16391 1.96218 1.99349 1.30812 0.98394 0.99404 0.98049 1.68106 1.10018 1.23816 1.21489 0.85753 0.81589 0.78549 0.78816 1.16451 1.19620 1.12577 1.18976 1.06795 0.94691 0.95692 1.21962 1.17162 0.95271 1.00829 1.21675 1.11445 0.95538 0.99728 1.21739 1.11972 0.95637 0.99917 1.21873 1.15972 0.95434 0.99176 0.91372 0.93463 0.92656 0.90681 0.87648 0.84602 0.88095 0.83370 0.90474 0.90071 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.74 9.45 71.98 0.68 -5.06 15 2 C 0.16 6.92 2.57 29.85 0.08 7.00 15 3 H 0.06 2.46 4.90 -2.39 -0.01 2.45 15 4 O -0.37 -15.16 9.32 -148.98 -1.39 -16.55 15 5 C 0.10 3.09 2.11 29.85 0.06 3.16 15 6 C -0.05 -1.21 5.54 71.98 0.40 -0.81 15 7 Br -0.17 -4.80 33.75 -20.37 -0.69 -5.49 15 8 C -0.02 -0.45 5.29 88.67 0.47 0.02 15 9 N -0.62 -16.01 12.70 24.11 0.31 -15.70 15 10 Si 0.94 26.03 28.07 68.60 1.93 27.96 15 11 H -0.24 -7.55 5.77 99.48 0.57 -6.97 15 12 H -0.27 -9.29 7.11 99.48 0.71 -8.58 15 13 H -0.20 -4.20 7.11 99.48 0.71 -3.50 15 14 C -0.16 -9.23 5.09 -19.83 -0.10 -9.33 15 15 C -0.33 -20.09 11.08 24.63 0.27 -19.82 15 16 C -0.27 -16.53 11.11 23.98 0.27 -16.26 15 17 C -0.27 -17.28 11.11 23.98 0.27 -17.02 15 18 C -0.31 -18.94 10.96 24.63 0.27 -18.67 15 19 H 0.07 4.12 8.06 -2.91 -0.02 4.10 15 20 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 21 H 0.05 2.18 8.14 -2.39 -0.02 2.16 15 22 H 0.07 2.37 8.14 -2.39 -0.02 2.35 15 23 H 0.11 2.72 7.54 -2.38 -0.02 2.70 15 24 H 0.14 2.76 8.13 -2.39 -0.02 2.74 15 25 H 0.10 2.92 8.05 -2.39 -0.02 2.90 15 26 H 0.35 7.37 8.23 -92.71 -0.76 6.61 15 27 H 0.08 4.32 8.06 -2.91 -0.02 4.30 15 28 H 0.08 4.68 8.06 -2.91 -0.02 4.66 15 29 H 0.08 4.58 8.06 -2.91 -0.02 4.56 15 Total: -1.00 -67.97 271.64 3.82 -64.14 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 1.00 Total: 22.43 kcal Atomic # 6 Polarization: -79.45 SS G_CDS: 2.66 Total: -76.79 kcal Atomic # 7 Polarization: -16.01 SS G_CDS: 0.31 Total: -15.70 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -1.39 Total: -16.55 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: 1.93 Total: 27.96 kcal Atomic # 35 Polarization: -4.80 SS G_CDS: -0.69 Total: -5.49 kcal Total: -67.97 3.82 -64.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224442741.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.478 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds