Wall clock time and date at job start Mon Mar 30 2020 01:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99725 * 2 1 4 4 H 1.48510 * 109.46924 * 264.99576 * 3 2 1 5 5 H 1.48502 * 109.47529 * 24.99142 * 3 2 1 6 6 H 1.48501 * 109.47293 * 144.99348 * 3 2 1 7 7 C 1.37870 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99831 * 189.45807 * 7 2 1 9 9 C 1.50692 * 120.00062 * 9.46654 * 7 2 1 10 10 H 1.09005 * 109.47151 * 305.44860 * 9 7 2 11 11 C 1.53001 * 109.47369 * 65.45130 * 9 7 2 12 12 Cl 1.80304 * 109.47039 * 185.03092 * 11 9 7 13 13 O 1.42902 * 109.47305 * 185.45171 * 9 7 2 14 14 C 1.35274 * 117.00456 * 149.99888 * 13 9 7 15 15 N 1.32774 * 120.61274 * 359.72008 * 14 13 9 16 16 C 1.31726 * 120.87200 * 179.71587 * 15 14 13 17 17 N 1.31946 * 122.19620 * 0.57898 * 16 15 14 18 18 C 1.32187 * 121.13908 * 359.71080 * 17 16 15 19 19 C 1.39806 * 118.98055 * 0.02562 * 18 17 16 20 20 C 1.47535 * 120.98137 * 180.02562 * 19 18 17 21 21 N 1.34778 * 119.99496 * 359.97332 * 20 19 18 22 22 O 1.21591 * 119.99961 * 179.97438 * 20 19 18 23 23 H 0.97006 * 120.00115 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47345 * 305.03294 * 11 9 7 25 25 H 1.09004 * 109.47164 * 65.03338 * 11 9 7 26 26 H 1.08001 * 118.90089 * 180.29691 * 16 15 14 27 27 H 1.07999 * 120.50807 * 179.97438 * 18 17 16 28 28 H 0.96994 * 120.00188 * 0.02562 * 21 20 19 29 29 H 0.97001 * 119.99398 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9854 -1.3948 5 1 1.3977 2.6810 0.5915 6 1 3.4898 1.4732 0.8032 7 6 2.0045 -1.1940 0.0005 8 1 3.0736 -1.2002 0.1542 9 6 1.2665 -2.4902 -0.2135 10 1 0.4566 -2.5713 0.5115 11 6 0.6881 -2.5200 -1.6297 12 17 -0.3179 -4.0019 -1.8370 13 8 2.1685 -3.5856 -0.0443 14 6 1.6464 -4.7461 0.4145 15 7 0.3520 -4.8410 0.6947 16 6 -0.1629 -5.9701 1.1365 17 7 0.5716 -7.0487 1.3322 18 6 1.8703 -7.0453 1.0854 19 6 2.4664 -5.8736 0.6097 20 6 3.9119 -5.8208 0.3192 21 7 4.6783 -6.9125 0.5124 22 8 4.4117 -4.7924 -0.0944 23 1 -0.4850 0.8401 0.0004 24 1 0.0702 -1.6363 -1.7885 25 1 1.5021 -2.5292 -2.3545 26 1 -1.2207 -6.0132 1.3499 27 1 2.4618 -7.9339 1.2496 28 1 4.2795 -7.7329 0.8420 29 1 5.6286 -6.8779 0.3211 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229428604.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:54 Heat of formation + Delta-G solvation = -36.643334 kcal Electronic energy + Delta-G solvation = -18755.452709 eV Core-core repulsion = 15512.206636 eV Total energy + Delta-G solvation = -3243.246073 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.90708 -38.66812 -37.95216 -34.86661 -33.81483 -33.45839 -32.63832 -31.31476 -29.33530 -25.30298 -25.05611 -23.90203 -21.39630 -20.83763 -18.35943 -17.76900 -17.45190 -16.59818 -15.99097 -15.51815 -14.99687 -14.66922 -14.16636 -14.12822 -13.73244 -13.43155 -13.14348 -12.93360 -12.15802 -11.84398 -11.21646 -11.10399 -11.04753 -10.83413 -10.40187 -10.29712 -9.74361 -9.56329 -9.55568 -9.43164 -9.24285 -8.96590 -8.63287 -8.34171 -6.38800 -4.44484 0.81551 1.57313 3.16815 3.19108 3.24368 3.27812 3.37756 3.55910 3.67632 4.18899 4.24239 4.28039 4.48414 4.95869 4.99779 5.11410 5.43804 5.60583 6.18147 6.25128 6.38644 6.75781 6.88463 7.11154 7.20892 7.41645 7.57782 7.75719 8.10819 8.38256 8.47957 8.70888 9.20926 10.69127 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.007239 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.960371 B = 3866.847077 C = 4640.701192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.068 3.932 3 Si 0.912 3.088 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.527 4.527 8 H 0.077 0.923 9 C 0.202 3.798 10 H 0.077 0.923 11 C -0.024 4.024 12 Cl -0.232 7.232 13 O -0.256 6.256 14 C 0.430 3.570 15 N -0.545 5.545 16 C 0.350 3.650 17 N -0.564 5.564 18 C 0.202 3.798 19 C -0.291 4.291 20 C 0.573 3.427 21 N -0.859 5.859 22 O -0.508 6.508 23 H 0.271 0.729 24 H 0.116 0.884 25 H 0.074 0.926 26 H 0.196 0.804 27 H 0.166 0.834 28 H 0.395 0.605 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 -12.733 1.330 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.137 4.137 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.095 0.905 9 C 0.148 3.852 10 H 0.094 0.906 11 C -0.087 4.087 12 Cl -0.206 7.206 13 O -0.155 6.155 14 C 0.242 3.758 15 N -0.274 5.274 16 C 0.063 3.937 17 N -0.284 5.284 18 C 0.036 3.964 19 C -0.301 4.301 20 C 0.357 3.643 21 N -0.425 5.425 22 O -0.382 6.382 23 H 0.081 0.919 24 H 0.134 0.866 25 H 0.093 0.907 26 H 0.212 0.788 27 H 0.183 0.817 28 H 0.223 0.777 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.040 -11.718 1.110 11.946 hybrid contribution 1.089 0.471 -0.203 1.204 sum 3.129 -11.247 0.907 11.709 Atomic orbital electron populations 1.69976 1.05957 1.28032 1.47615 1.24964 0.95065 0.99635 0.93995 0.86263 0.79722 0.81415 0.78760 1.20020 1.20863 1.19394 1.20944 0.95645 0.88148 1.51688 0.90461 1.20721 0.90238 0.81605 0.92678 0.90581 1.25518 0.94896 0.86950 1.01344 1.98635 1.75861 1.48123 1.97999 1.86537 1.38605 1.17187 1.73146 1.20325 0.86873 0.86995 0.81572 1.68567 1.11970 1.28959 1.17883 1.24853 1.00480 0.82308 0.86074 1.68366 1.06470 1.31045 1.22566 1.23077 0.91072 0.94957 0.87325 1.20729 0.95815 0.96124 1.17443 1.17680 0.85629 0.83478 0.77500 1.43686 1.12575 1.14317 1.71937 1.90938 1.73873 1.29880 1.43471 0.91933 0.86594 0.90691 0.78768 0.81742 0.77663 0.76612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.72 12.16 55.43 0.67 -23.04 15 2 C 0.07 1.79 5.16 -17.82 -0.09 1.70 15 3 Si 0.91 20.55 29.55 -169.99 -5.02 15.53 15 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 15 7 C -0.53 -14.36 8.81 -34.45 -0.30 -14.67 15 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 15 9 C 0.20 5.16 2.12 -27.89 -0.06 5.10 15 10 H 0.08 2.09 6.96 -51.93 -0.36 1.73 15 11 C -0.02 -0.57 6.22 37.16 0.23 -0.34 15 12 Cl -0.23 -4.92 25.94 -51.86 -1.35 -6.26 15 13 O -0.26 -6.27 7.98 -38.66 -0.31 -6.58 15 14 C 0.43 9.02 6.67 -16.18 -0.11 8.91 15 15 N -0.54 -10.73 6.57 -14.32 -0.09 -10.83 15 16 C 0.35 5.55 12.27 -92.08 -1.13 4.42 15 17 N -0.56 -8.18 10.42 -14.29 -0.15 -8.33 15 18 C 0.20 2.67 10.80 -16.81 -0.18 2.49 15 19 C -0.29 -4.96 5.92 -104.56 -0.62 -5.58 15 20 C 0.57 9.51 8.05 -12.47 -0.10 9.41 15 21 N -0.86 -8.76 8.83 30.46 0.27 -8.49 15 22 O -0.51 -11.05 16.15 -15.86 -0.26 -11.31 15 23 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 24 H 0.12 2.87 6.80 -51.93 -0.35 2.51 15 25 H 0.07 1.72 8.14 -51.93 -0.42 1.30 15 26 H 0.20 2.42 8.06 -52.49 -0.42 2.00 15 27 H 0.17 1.32 6.53 -52.49 -0.34 0.98 15 28 H 0.39 2.56 6.96 -40.82 -0.28 2.28 15 29 H 0.40 3.50 8.93 -40.82 -0.36 3.14 15 LS Contribution 273.47 15.07 4.12 4.12 Total: -1.00 -32.16 273.47 -6.57 -38.73 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -2.10 Total: 5.01 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -2.36 Total: 11.45 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.70 Total: -50.69 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.56 Total: -17.89 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -4.92 SS G_CDS: -1.35 Total: -6.26 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.16 -6.57 -38.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229428604.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.083 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds