Wall clock time and date at job start Mon Mar 30 2020 01:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86806 * 119.99794 * 2 1 4 4 H 1.48500 * 109.47025 * 274.68914 * 3 2 1 5 5 H 1.48499 * 109.47194 * 34.68773 * 3 2 1 6 6 H 1.48501 * 109.46849 * 154.69316 * 3 2 1 7 7 C 1.37877 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99893 * 186.95903 * 7 2 1 9 9 C 1.50695 * 119.99749 * 6.69187 * 7 2 1 10 10 H 1.09005 * 109.47180 * 305.31162 * 9 7 2 11 11 C 1.52995 * 109.47713 * 65.31276 * 9 7 2 12 12 Cl 1.80299 * 109.47360 * 185.68026 * 11 9 7 13 13 O 1.42902 * 109.46850 * 185.31928 * 9 7 2 14 14 C 1.35448 * 116.99924 * 149.99867 * 13 9 7 15 15 N 1.32485 * 120.25514 * 359.71989 * 14 13 9 16 16 N 1.28274 * 122.21394 * 179.76814 * 15 14 13 17 17 C 1.31875 * 122.63006 * 0.50344 * 16 15 14 18 18 C 1.38479 * 120.13607 * 359.76952 * 17 16 15 19 19 C 1.40075 * 117.88079 * 359.97438 * 18 17 16 20 20 C 1.47829 * 121.18223 * 179.97438 * 19 18 17 21 21 N 1.34780 * 119.99500 * 0.02562 * 20 19 18 22 22 O 1.21541 * 120.00362 * 180.02562 * 20 19 18 23 23 H 0.97001 * 119.99669 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47223 * 305.68325 * 11 9 7 25 25 H 1.09012 * 109.46771 * 65.68414 * 11 9 7 26 26 H 1.07998 * 119.93394 * 179.75764 * 17 16 15 27 27 H 1.07997 * 121.06031 * 180.02562 * 18 17 16 28 28 H 0.96999 * 119.99915 * 359.97438 * 21 20 19 29 29 H 0.96992 * 119.99945 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3975 2.1037 -1.3954 5 1 1.4997 2.6221 0.7968 6 1 3.5928 1.4136 0.5985 7 6 2.0046 -1.1941 0.0005 8 1 3.0786 -1.1974 0.1139 9 6 1.2588 -2.4947 -0.1510 10 1 0.4816 -2.5588 0.6107 11 6 0.6186 -2.5570 -1.5392 12 17 -0.4096 -4.0330 -1.6612 13 8 2.1682 -3.5861 0.0037 14 6 1.6669 -4.7370 0.5123 15 7 0.3878 -4.8170 0.8481 16 7 -0.1272 -5.8890 1.3287 17 6 0.5758 -6.9857 1.5336 18 6 1.9251 -7.0147 1.2235 19 6 2.5004 -5.8530 0.6929 20 6 3.9342 -5.8029 0.3366 21 7 4.7124 -6.8879 0.5202 22 8 4.4113 -4.7834 -0.1219 23 1 -0.4850 0.8401 -0.0004 24 1 0.0028 -1.6713 -1.6954 25 1 1.4001 -2.5947 -2.2982 26 1 0.0982 -7.8631 1.9443 27 1 2.5149 -7.9049 1.3848 28 1 4.3318 -7.7014 0.8865 29 1 5.6531 -6.8553 0.2861 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230909942.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:48 Heat of formation + Delta-G solvation = -23.587390 kcal Electronic energy + Delta-G solvation = -18753.416592 eV Core-core repulsion = 15510.736667 eV Total energy + Delta-G solvation = -3242.679925 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.051 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.92947 -38.85161 -37.87902 -34.79175 -34.01450 -33.43338 -32.46542 -31.21790 -29.25984 -25.48800 -25.22242 -23.94082 -21.50684 -20.89381 -18.34612 -17.80818 -17.31204 -16.61698 -15.92434 -15.54457 -15.05789 -14.79259 -14.39091 -14.23439 -13.57205 -13.42952 -13.21128 -12.85159 -12.08534 -11.75855 -11.13973 -11.09444 -10.93094 -10.79588 -10.31740 -10.15689 -10.09988 -9.73676 -9.67820 -9.42862 -9.31298 -9.05967 -8.60061 -8.20256 -6.34041 -4.41001 0.59110 1.39021 3.04468 3.18955 3.26597 3.31112 3.40197 3.45072 3.65139 4.00011 4.26681 4.45838 4.57988 4.82102 4.88081 5.00897 5.25244 5.62153 5.83670 6.21284 6.30109 6.34078 6.75706 6.80524 7.19562 7.27834 7.60094 7.79443 8.13133 8.32310 8.72622 9.07842 9.24863 10.73832 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.007277 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.278729 B = 3846.600404 C = 4630.900836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.067 3.933 3 Si 0.913 3.087 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.525 4.525 8 H 0.077 0.923 9 C 0.202 3.798 10 H 0.075 0.925 11 C -0.027 4.027 12 Cl -0.230 7.230 13 O -0.259 6.259 14 C 0.329 3.671 15 N -0.264 5.264 16 N -0.180 5.180 17 C -0.031 4.031 18 C -0.058 4.058 19 C -0.179 4.179 20 C 0.566 3.434 21 N -0.856 5.856 22 O -0.497 6.497 23 H 0.271 0.729 24 H 0.119 0.881 25 H 0.074 0.926 26 H 0.171 0.829 27 H 0.149 0.851 28 H 0.396 0.604 29 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.609 -14.558 1.851 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.138 4.138 3 Si 0.739 3.261 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.095 0.905 9 C 0.147 3.853 10 H 0.092 0.908 11 C -0.090 4.090 12 Cl -0.204 7.204 13 O -0.159 6.159 14 C 0.143 3.857 15 N -0.124 5.124 16 N -0.028 5.028 17 C -0.195 4.195 18 C -0.087 4.087 19 C -0.195 4.195 20 C 0.350 3.650 21 N -0.422 5.422 22 O -0.369 6.369 23 H 0.081 0.919 24 H 0.137 0.863 25 H 0.092 0.908 26 H 0.188 0.812 27 H 0.166 0.834 28 H 0.225 0.775 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.396 -12.809 1.492 13.335 hybrid contribution 1.670 -0.421 -0.066 1.723 sum 5.066 -13.229 1.426 14.238 Atomic orbital electron populations 1.69967 1.05921 1.27963 1.47765 1.24976 0.95096 0.99624 0.94068 0.86220 0.79855 0.81602 0.78376 1.20188 1.20797 1.19347 1.20958 0.95046 0.87880 1.52371 0.90453 1.20727 0.89614 0.81729 0.93219 0.90779 1.25526 0.94580 0.87324 1.01569 1.98646 1.74722 1.48390 1.98652 1.86548 1.39112 1.17889 1.72328 1.21754 0.89493 0.88080 0.86324 1.73640 1.08706 1.17568 1.12499 1.72710 1.31068 0.95542 1.03469 1.23944 0.92221 0.99735 1.03617 1.22355 0.96301 0.96735 0.93342 1.20330 0.95457 0.94587 1.09094 1.17785 0.85360 0.83562 0.78324 1.43668 1.13685 1.15241 1.69653 1.90951 1.74027 1.30089 1.41827 0.91933 0.86275 0.90754 0.81197 0.83367 0.77517 0.76386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.16 12.02 55.43 0.67 -23.49 15 2 C 0.07 1.78 5.20 -17.82 -0.09 1.69 15 3 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 15 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 7 C -0.52 -14.49 8.82 -34.44 -0.30 -14.80 15 8 H 0.08 2.18 7.82 -52.49 -0.41 1.77 15 9 C 0.20 5.27 2.12 -27.89 -0.06 5.22 15 10 H 0.07 2.10 6.97 -51.93 -0.36 1.74 15 11 C -0.03 -0.66 6.22 37.15 0.23 -0.42 15 12 Cl -0.23 -5.14 25.96 -51.86 -1.35 -6.48 15 13 O -0.26 -6.43 7.97 -39.22 -0.31 -6.74 15 14 C 0.33 7.05 6.75 -16.43 -0.11 6.94 15 15 N -0.26 -5.68 7.59 30.73 0.23 -5.45 15 16 N -0.18 -3.29 11.47 30.51 0.35 -2.94 15 17 C -0.03 -0.41 11.29 -17.44 -0.20 -0.60 15 18 C -0.06 -0.68 9.69 -38.80 -0.38 -1.05 15 19 C -0.18 -2.99 5.93 -104.45 -0.62 -3.61 15 20 C 0.57 9.13 8.06 -12.34 -0.10 9.03 15 21 N -0.86 -8.21 8.83 30.52 0.27 -7.94 15 22 O -0.50 -10.59 16.15 -15.85 -0.26 -10.85 15 23 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 24 H 0.12 3.03 6.66 -51.93 -0.35 2.68 15 25 H 0.07 1.73 8.14 -51.92 -0.42 1.31 15 26 H 0.17 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.15 0.89 6.61 -52.49 -0.35 0.55 15 28 H 0.40 2.28 7.01 -40.82 -0.29 2.00 15 29 H 0.40 3.28 8.93 -40.82 -0.36 2.91 15 LS Contribution 273.45 15.07 4.12 4.12 Total: -1.00 -33.39 273.45 -5.02 -38.41 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -2.10 Total: 3.22 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.63 Total: 2.39 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 1.52 Total: -39.83 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.57 Total: -17.59 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -5.14 SS G_CDS: -1.35 Total: -6.48 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.39 -5.02 -38.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230909942.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.826 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds